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Journal
/
Biologie
/
A Nanopore-Based Genomic Approach to Control Rabies in Low-Income Countries
/
Sequencing, Live and Offline Basecalling, Analysis, and Interpretation of Rabies Virus (RABV) Genome
Journal JoVE
Biologie
This content is Free Access.
Journal JoVE
Biologie
Sequencing, Live and Offline Basecalling, Analysis, and Interpretation of Rabies Virus (RABV) Genome
Sequencing, Live and Offline Basecalling, Analysis, and Interpretation of Rabies Virus (RABV) Genome
A Nanopore-Based Genomic Approach to Control Rabies in Low-Income Countries
DOI:
10.3791/200318-v
•
05:00 min
•
August 18, 2023
•
Criselda Bautista
2
,
Gurdeep Jaswant
3,4,5
,
Hollie French
6
,
Kathryn Campbell
,
Rowan Durrant
,
Robert Gifford
6
,
Grace S. N. Kia
8
,
Brian Ogoti
9
,
Katie Hampson
,
Kirstyn Brunker
6
1
School of Biodiversity, One Health & Veterinary Medicine
,
University of Glasgow
,
2
Research Institute for Tropical Medicine
,
3
University of Nairobi, Institute of Tropical and Infectious Diseases
,
4
Tanzania Industrial Research Development Organization
,
5
Ifakara Health Institute
,
6
MRC-University of Glasgow Centre for Virus Research
,
7
Department of Veterinary Public health
,
Ahmadu Bello University
,
8
African Centre of Excellence for Neglected Tropical Diseases and Forensic Biotechnology
,
Ahmadu Bello University
,
9
University of Nairobi, Kenya and Center for Epidemiological Modelling and Analysis
,
University of Nairobi
Tags
Sequencing
Flow Cell
Priming
Basecalling
Analysis
Interpretation
Rabies Virus
RABV
Genome
Rampart
Arctic RabV
MadDog
Lineage Assignment
Consensus Sequences
Mapped Reads
Coverage
Fastq
FastA
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Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings
Sample Preparation, RNA Extraction, PCR Clean Up, and Quantification for Whole Genome Sequencing of Rabies Virus (RABV)
Sequencing, Live and Offline Basecalling, Analysis, and Interpretation of Rabies Virus (RABV) Genome
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