JoVE
JoVE
Centre de ressources universitaires
Recherche
Sciences du comportement
Biochimie
Biologie
Bio-ingénierie
Recherche en cancérologie
Chimie
Biologie du développement
Ingénierie
Environnement
Génétique
Immunologie et infection
Médecine
Neurosciences
Journal JoVE
Encyclopédie des expériences JoVE
JoVE Chrome Extension
Enseignement
Biologie
Chimie
Clinical
Ingénierie
Sciences de l'environnement
Pharmacology
Physique
Psychologie
Statistiques
JoVE Core
JoVE Science Education
Manuel de laboratoire JoVE
JoVE Quiz
JoVE Business
Videos Mapped to your Course
Auteurs
Bibliothécaires
Lycées
À propos
Sign-In
S'identifier
Contactez-nous
Recherche
Journal JoVE
Encyclopédie des expériences JoVE
Enseignement
JoVE Core
JoVE Science Education
Manuel de laboratoire JoVE
Lycées
FR
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
FR
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
Close
Recherche
Sciences du comportement
Biochimie
Bio-ingénierie
Biologie
Recherche en cancérologie
Chimie
Biologie du développement
Ingénierie
Environnement
Génétique
Immunologie et infection
Médecine
Neurosciences
Products
Journal JoVE
Encyclopédie des expériences JoVE
Enseignement
Biologie
Chimie
Clinical
Ingénierie
Sciences de l'environnement
Pharmacology
Physique
Psychologie
Statistiques
Products
JoVE Core
JoVE Science Education
Manuel de laboratoire JoVE
JoVE Quiz
JoVE Business
Vidéos associées à vos cours
Teacher Resources
Get in Touch
Instant Trial
Log In
FR
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
Journal
/
Biologie
/
3′ End Sequencing Library Preparation with A-seq2
Journal JoVE
Biologie
This content is Free Access.
Journal JoVE
Biologie
3′ End Sequencing Library Preparation with A-seq2
3′ End Sequencing Library Preparation with A-seq2
DOI:
10.3791/56129-v
•
12:01 min
•
October 10, 2017
•
Georges Martin
,
Ralf Schmidt
,
Andreas J. Gruber
,
Souvik Ghosh
,
Walter Keller
,
Mihaela Zavolan
2
1
Computational and Systems Biology, Biozentrum
,
University of Basel
,
2
Swiss Institute of Bioinformatics, Biozentrum
,
University of Basel
Chapitres
00:05
Titre
00:46
Isolation of mRNA from Cells
03:24
5′ End Phosphorylation, DNase Treatment, and 3′ End Blocking
04:30
Ligation of Reverse 3′ Adapters to 5′ End of RNA Fragments and Reverse Transcription
05:59
Digestion with Uracil DNA Glycosylase Enzyme Mix and Ligation of 5′ Adapters to 5′ Ends of cDNA
07:44
Pilot PCR, Amplification of Libraries, and Size Selection
09:21
Computational Analysis of DNA Sequence Data
10:03
Results: The A-seq2 Method Maps pre-mRNA 3′ End Processing Sites
10:52
Conclusion
Summary
Traduction automatique
English (Original)
العربية (Arabic)
中文 (Chinese)
Nederlands (Dutch)
français (French)
Deutsch (German)
עברית (Hebrew)
italiano (Italian)
日本語 (Japanese)
한국어 (Korean)
português (Portuguese)
русский (Russian)
español (Spanish)
Türkçe (Turkish)
Traduction automatique
This protocol describes a method for mapping pre-mRNA 3' end processing sites.
Tags
3′ End Sequencing
A-seq2
MRNA Processing
Polyadenylation
Transcript Isoforms
Cell Types
Poly(A) Stretches
Adapter Dimers
Cell Lysis
Oligo D(T)25 Magnetic Beads
Buffer A
Buffer B
Alkaline Hydrolysis
RNA Isolation
Polynucleotide Kinase
Article
Embed
AJOUTER À LA PLAYLIST
Usage Statistics
Vidéos Connexes
Large Insert Environmental Genomic Library Production
Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for Mapping Chromatin Interactions and Understanding Transcription Regulation
Analysis of RNA Processing Reactions Using Cell Free Systems: 3′ End Cleavage of Pre-mRNA Substrates
in vitro
Interactome-Seq: A Protocol for Domainome Library Construction, Validation and Selection by Phage Display and Next Generation Sequencing
Assessment of Global DNA Double-Strand End Resection using BrdU-DNA Labeling coupled with Cell Cycle Discrimination Imaging
Application of Passive Head Motion to Generate Defined Accelerations at the Heads of Rodents
An Improved Chemotaxis Assay for the Rapid Identification of Rhizobacterial Chemoattractants in Root Exudates
Single-Cell Suspension Preparation from Nile Tilapia Intestine for Single-Cell Sequencing
Author Spotlight: Decoding RNA Methylation's Role in Pancreatic Cancer - A Single-Base Resolution Study
Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
Read Article