Disease-causing mutations in actin can alter cytoskeletal function. Cytoskeletal dynamics are quantified through imaging of fluorescently tagged proteins using total internal fluorescence microscopy. As an example, the cytoskeletal protein, Aip1p, has altered localization and movement in cells expressing the mutant actin isoform, R256H.
Mutations in actin cause a range of human diseases due to specific molecular changes that often alter cytoskeletal function. In this study, imaging of fluorescently tagged proteins using total internal fluorescence (TIRF) microscopy is used to visualize and quantify changes in cytoskeletal dynamics. TIRF microscopy and the use of fluorescent tags also allows for quantification of the changes in cytoskeletal dynamics caused by mutations in actin. Using this technique, quantification of cytoskeletal function in live cells valuably complements in vitro studies of protein function. As an example, missense mutations affecting the actin residue R256 have been identified in three human actin isoforms suggesting this amino acid plays an important role in regulatory interactions. The effects of the actin mutation R256H on cytoskeletal movements were studied using the yeast model. The protein, Aip1, which is known to assist cofilin in actin depolymerization, was tagged with green fluorescent protein (GFP) at the N-terminus and tracked in vivo using TIRF microscopy. The rate of Aip1p movement in both wild type and mutant strains was quantified. In cells expressing R256H mutant actin, Aip1p motion is restricted and the rate of movement is nearly half the speed measured in wild type cells (0.88 ± 0.30 μm/sec in R256H cells compared to 1.60 ± 0.42 μm/sec in wild type cells, p < 0.005).
Actin is the dominant protein comprising the cytoskeleton and participates in critical cellular processes including cell division, organelle movement, cell motility, contraction, and signaling. Over the past decade, disease-causing mutations in actin have been discovered in each of the six human actin isoforms leading to a range of disorders, from myopathies to coronary artery disease1-7. The processes by which actin mutations lead to disease continue to be elucidated. The yeast model remains the gold standard to study the biochemical effects of mutations on actin function owing to the advantages of the single essential actin isoform, genetic tractability and high conservation of actin sequence and function. Studies show that individual actin mutations lead to molecular specific dysfunctions with dominant negative effects8. For example, deafness-causing mutations in γ-non-muscle actin that affect the Lys-118 residue alter regulation by the actin binding protein Arp2/39. Studies frequently employ in vitro analyses of protein: protein interactions. Investigations into the effect of actin mutations on cell biology and, in particular, actin binding protein localization in the cell are limited.
Studies of the yeast cytoskeleton in vivo conventionally rely on images of fixed cells from an inverted fluorescence microscope10. These experiments supplied foundational data about the morphology of the actin cytoskeleton. Investigations have since incorporated three dimensional confocal imaging to visualize the complex cytoskeletal network11,12. This imaging permits quantification of the abundance and relative location of actin patches and filaments. Thin section electron tomography has been used to image the morphology of the dense filamentous networks relative to preserved subcellular structures13. Crowded cellular spaces with a small cross section can be examined in fine detail with this technique. Imaging studies have been extended to living cells using time lapse fluorescent microscopy. When photo bleaching and background fluorescence can be moderated, time lapse imaging allows investigations as to the dynamics of cytoskeletal proteins and the response to environmental conditions11,14. Separately, visualization of the dynamics of actin filaments in vitro was advanced by the introduction of total internal reflection fluorescence (TIRF) microscopy. Compared to wide field microscopy, TIRF has the advantage of decreased background fluorescence and enhanced contrast to monitor individual filaments15,16. With these qualities, TIRF microscopy has been adapted by cell biologists to monitor cellular structures at the plasma membrane17,18. Cellular events, including changes in the cytoskeleton, can be visualized real time with low phototoxicity, maximal contrast, and minimal background florescence19.
To better understand the effect of actin mutations on the movement, localization, and turnover of cytoskeletal proteins in the cell, TIRF microscopy and protein tagging were used. Herein, methods to study the effects of a clinically relevant mutation in actin on cytoskeletal dynamics in Saccharomyces cerevisiae are described. Specifically, the localization and movement of the actin binding protein, Aip1p, was visualized and quantified in cells expressing the R256H mutation in actin. These techniques complement in vitro biochemical studies and allow for a greater understanding of protein interactions and functions.
1. Cloning into the PB1996 Plasmid
2. Mutant Yeast Strain Generation
3. Transforming the Plasmid into Yeast Cells
4. Visualizing the Aip1p Protein Movement Using Total Internal Reflection Fluorescence Microscopy
A method to image the dynamics of cytoskeletal proteins in the cell is presented. The actin-binding protein, Aip1p, was tagged with GFP. The design for the plasmid encoding the tagged product is shown in Figure 1. The plasmid was then transformed into the yeast cells. Expression of the fluorescently tagged Aip1p allowed visualization of the protein behavior in the cell. Aip1p typically localizes to actin patches at sites of endocytosis22. To quantify Aip1p movement, more than 50 fluorescent Aip1p foci were tracked in more than 10 cells, as shown in Figure 2A. The average velocity was calculated for each fluorescent Aip1p area (see Figure 2B). In wild type cells, Aip1p movements range across a cell, and later disappear. The average speed of the movement of Aip1p in wild type cells is 1.60 ± 0.42 μm/sec. Cells expressing the R256H mutant actin, known to have abnormal morphology of the actin cytoskeleton23, have an altered Aip1p phenotype. In the mutant strain, Aip1p movement is restricted and slower. The average speed of Aip1p movement is 0.88 ± 0.30 μm/sec (p <0.005). The Aip1p migration is limited to the immediate area, with foci circling around each other rather than crossing the cell. In addition, Aip1p is visible longer suggesting slower turnover of Aip1 protein.
Figure 1. Diagram of plasmid construction. A) The Aip1 fragment amplified via PCR is shown being digested by restriction enzymes (yellow bolts). B) The plasmid, PB1996, is digested with restriction enzymes to remove the Abp140 gene. C) The digested Aip1 and PB1996 fragments are ligated to form the plasmid PB1996 Aip1. D) The PB1996 Aip1 plasmid is linearized and transformed into yeast cells where the DNA is integrated into the chromosome.
Figure 2. Diagram of mutant yeast actin strain construction. The plasmid encoding the mutant actin isoform is then transformed into a cell line and selected based on the ability to grow on media lacking tryptophan. The green lines indicate chromosomal DNA. The black circle is a plasmid. The brown circle represents a yeast cell. The boxes each indicate a specific gene: yellow is the actin, orange is leucine, brown is uracil, and pink is tryptophan. The X over the box indicates gene has been deleted from the chromosomal DNA. In steps 2.3 and 2.4, the black star on the actin gene indicates the R256H mutation.
Figure 3. Aip1p-GFP movement in live yeast cells. A) Images of wild type and R256H cells expressing GFP-tagged Aip1p are shown. Cells are in early log phase growth and images were acquired every 0.2 sec for 15 sec. The arrows denote the location of an individual fluorescent focus over time, blue for wild type and red for mutant actin strains. The last frame shows the path of the Aip1 foci as a green line. Scale bar shown is 5 μm. B) The rate of Aip1p movement was measured using ImageJ. The scatter plot graph displays the rate for individual fluorescent foci. The horizontal bar indicates the average velocity for wild type (blue) and mutant (red) actin strains. Aip1p moves at 1.60 ± 0.42 μm/sec in wild type cells compared to 0.88 ± 0.30 μm/sec for cells expressing R256H mutant actin (p < 0.005).
An effective strategy to visualize the dynamics of the cytoskeleton and the utility in investigations on pathogenic mutations has been described here. Advanced imaging modalities have created new opportunities to understand the intracellular movement of proteins near the cell membrane. Total internal reflection fluorescence microscopy (TIRF) is a sensitive technique for functional studies in living cells. TIRF uses an angled excitation laser that creates an evanescent field due to the difference in refractive indexes of the coverslip and aqueous medium. The energy of the evanescent field excites fluorophores but decreases exponentially with the distance of the interface between the coverslip and water. This results in a high signal to noise ratio and powerful resolution from 50-250 nm above the coverslip/medium interface. These qualities make TIRF microscopy a powerful tool to visualize cytoskeletal proteins at the single molecule level in living cells with less phototoxicity and enhanced contrast relative to other techniques24-26.
The cytoskeleton involves numerous proteins working in concert to adapt to cellular needs. The effect of vascular-disease causing mutations in actin on regulation by cofilin was recently studied by our group27. Based on our initial findings, Aip1p, an actin binding protein that facilitates cofilin-dependent actin severing, was investigated. In preliminary studies, cells expressing the actin mutation R256H grow poorly in the absence of Aip1p, especially under stress conditions. This suggests that the Aip1p regulation of the mutant actin cytoskeleton is altered. Our analyses of the movement and localization of Aip1p in the R256H strain using fluorescent tagging and TIRF microscopy corroborates the abnormal dynamics. In the future, we plan to tag additional proteins, such as cofilin, with different fluorophores to visualize the movement of multiple proteins simultaneously to better understand the protein: protein interactions.
There are some limitations to generating a fluorescently tagged protein and some instances where the technique is not feasible. A fluorescent tag can disrupt the activity of the protein or alter the interaction with binding partners. This has been encountered in attempts to tag cofilin, another actin binding protein. Expression of the tagged construct has been unsuccessful in haploid yeast due to disrupted cofilin function. Cofilin is an essential protein in yeast. Thus, deletion of cofilin without concomitant re-introduction is lethal; barring subsequent introduction on a plasmid. One way to avoid this limitation is to use diploid yeast. One copy of the cofilin gene was knocked out, a tagged version was exogenously introduced on a plasmid, and then selection for daughter cells that lack genomic cofilin but contain the plasmid22 The ability to fluorescently tag the protein was gained by adding the tag to internal residues in the protein that were previously shown to have little impact on its protein-protein interactions. The N- or C-terminus are preferable sites to add the tag unless the regions are known to influence pertinent protein: protein interactions. If this does not yield a functional protein, the alternate terminus or internal residues can be attempted.
There are a few critical steps in implementing the techniques described. One is determining the appropriate location to tag the protein that conserves function. Robust controls must be included to validate that protein function is preserved. Second, the slide must be monitored to ensure the cells do not desiccate during imaging. Wax can be used around the edges of the cover slip to prevent dehydration if needed. These steps to ensure success are straightforward making this approach tractable and advantageous to image structures near the plasma membrane. The ability to quantify protein localization and movement in live cells can enhance understanding of cellular functions. As mutations affecting cytoskeletal proteins are identified, expression of fluorescently tagged proteins and TIRF microscopy can be useful to investigate the pathophysiology underlying human disease.
The authors have nothing to disclose.
The authors thank Peter Rubenstein for useful discussion and technical advice and David Pellman for the original PB1996 clone. This work was supported by a grant from the March of Dimes and funding from the Ride for the Kids.
Agarose | rpi | 9012-36-6 | |
Bromophenol Blue | Amresco | 115-39-9 | |
BSA | NEB | B9001S | |
Change-IT Multiple Mutation Site Directed Mutagenesis Kit | USB Corporation | 4166059 | |
CutSmart Buffer | NEB | B7204S | |
DNA, single stranded from salmon testes | Sigma | 9007-49-2 | |
EDTA pH 7.4 | Sigma | 93302 | |
Ethidium Bromide | Invitrogen | 15585-011 | Warning! Harmful irritation |
Fungal/Bacterial DNA Kit | Symo Research | D6005 | |
HpaI | NEB | R0105S | |
Lithium Acetate | AlfaAesar | 6108-17-4 | |
Low DNA Mass Ladder | Invitrogen | 10068-013 | |
NE Buffer #4 | NEB | B7004S | |
Platinum PCR SuperMix High Fidelity | Invitrogen | 12532-016 | |
Miniprep Kit | Qiagen | 27106 | Any kit will work |
Quick Ligation Kit | NEB | M2200S | |
Sodium azide | Sigma | 26628-22-8 | |
PBS | Invitrogen | 10010-023 | |
PEG | Amresco | 25322-68-3 | |
Tris Base Ultrapure | rpi | 77-86-1 | |
Wizard SV Gel and PCR Clean-Up System | Promega | 1/6/2015 | |
XhoI | NEB | R0146S | |
XmaI | NEB | R0180S | |
YPD media | LabExpress | 3011 | |
-URA Media | LabExpress | 3010 | |
PCR Machine | Invitrogen | 4359659 | Any PCR machine will work |
TIRF Microscope | Olympus IX81 | ||
Hamamatsu ORCA-R camera | Hamamatsu |