علم الوراثة، العدد 172، ChIP-seq، Magnaporthe oryzae، تعديل هيستون، H3K4me3، تحليل الجينوم على نطاق واسع، الجين المستهدف Protocols and Video Articles

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Genome-wide Analysis of Histone Modifications Distribution using the Chromatin Immunoprecipitation Sequencing Method in Magnaporthe oryzae

Authors

Author

Zechi Wu*¹, Wanyu Sun*¹, Sida Zhou¹, Li Zhang¹, Xinyu Zhao¹, Yang Xu¹, Weixiang Wang¹

Institution

¹Beijing Key Laboratory of New Technology in Agricultural Application, National Demonstration Center for Experimental Plant Production Education, Department of Agronomy, Beijing University of Agriculture

Journal (Genetics)

Automating ChIP-seq Experiments to Generate Epigenetic Profiles on 10,000 HeLa Cells

Authors

Author

Geoffrey Berguet¹, Jan Hendrickx¹, Celine Sabatel¹, Miklos Laczik¹, Sharon Squazzo², Ignacio Mazon Pelaez², Rini Saxena², Helene Pendeville¹, Dominique Poncelet¹

Institution

¹Diagenode S.A., ²Diagenode Inc.

Journal (Biology)

Visualizing Early Infection Sites of Rice Blast Disease (Magnaporthe oryzae) on Barley (Hordeum vulgare) Using a Basic Microscope and a Smartphone

Authors

Author

Jessica G. Cooper¹, Nicole M. Donofrio¹, Jeffrey L. Caplan¹, Timothy R. Chaya¹

Institution

¹Department of Plant and Soil Sciences, University of Delaware

Journal (Developmental Biology)

| Methods Collections

CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data

Authors

Author

Simone G. Riva^1,2, Emily Georgiades^1,2, E. Ravza Gur^1,2, Matthew Baxter^1,2,3, Jim R. Hughes^1,2

Institution

¹MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, ²MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, ³Division of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford

Journal (Genetics)

CARIP-Seq and ChIP-Seq: Methods to Identify Chromatin-Associated RNAs and Protein-DNA Interactions in Embryonic Stem Cells

Authors

Author

Benjamin L. Kidder^1,2

Institution

¹Department of Oncology, Wayne State University School of Medicine, ²Karmanos Cancer Institute, Wayne State University School of Medicine

Journal (Developmental Biology)

A Semiautomated ChIP-Seq Procedure for Large-scale Epigenetic Studies

Authors

Author

Justin Cayford¹, Sara Herrera-de la Mata¹, Benjamin Joachim Schmiedel¹, Vivek Chandra¹, Pandurangan Vijayanad¹, Grégory Seumois¹

Institution

¹Division of Vaccine Discovery, La Jolla Institute for Immunology

Journal (Biology)

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