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Method Article

Identification and Enumeration of Immune Cells in Bronchoalveolar Lavage Fluid by Flow Cytometry

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July 8th, 2025

In This Article

Abstract

Source: Van Hoecke, L. et al., Bronchoalveolar Lavage of Murine Lungs to Analyze Inflammatory Cell Infiltration. J. Vis. Exp. (2017)

This video demonstrates the use of flow cytometry to identify and count various immune cells in bronchoalveolar lavage fluid. Initially, single immune cells are identified using a viability dye, followed by differential staining of surface marker proteins, enabling the precise enumeration of each cell type.

Protocol

All procedures involving animal models have been reviewed by the local institutional animal care committee and the JoVE veterinary review board.

1. Preparation

  1. Lavage fluid
    1. Prepare a balanced salt solution with 100 µM ethylenediaminetetraacetic acid (EDTA).
      NOTE: To measure protein levels in the bronchoalveolar Lavage (BAL) fluid, it is recommended to add protease inhibitors to prevent protease activity in the BAL fluid.
  2. Catheter
    1. Make a catheter by inserting a 23 G needle into transparent plastic polyethylene 21 G tubing (inner diamete....

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Results

Flow cytometry diagram, cell sorting process, FSC-SSC analysis, immune cell identification.
Figure 1: Gating Strategy for the Flow Cytometric Detection of Macrophages, Dendritic Cells, T Cells, B Cells, Neutrophils, and Eosinophils in BAL Fluid. BAL cells were isolated using the described BAL protocol. Cells were isolated from mice 24 h after intratrac.......

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Balanced salt solutionThermo Fisher Scientific14175-129
Ethyleendiaminetetra acetic acidSigma-AldrichE6511Irritating
23G x 1 1/4 needleHenke Sass Wolf4710006030size: 0,60 x 30 mm
26G x 1/2 neeldeHenke Sass Wolf4710004512size: 0,45*12 mm
Plastic tubingBD medical technology427411Polyethylene Tubing, I.D 0.58 mm (.023") O.D. .965 mm (0.38") 30.5m (100')
Sodium pentobarbitalKela NV514
Phosphate buffered salineLonzaBE17-516FPBS without Ca++ Mg++ or phenol red; sterile filtered
1ml syringesHenke Sass Wolf5010.200V0non pyrogenic and non toxic
ForcepsFine Science Tools GmbH 91197-00
Surgical scissorsFine Science Tools GmbH 91460-11
Centrifuge tube 50 mlTH.Geyer7696705Free from Rnase/Dnase/endotoxin
Centrifuge tube 15 mlTH.Geyer7696702Free from Rnase/Dnase/endotoxin
Microcentrifuge tube 1,5 mlSigma-Aldrich0030 120.094Polypropylene
MicrocentrifugeSigma-Aldrich5415R
CentrifugeThermo Fisher Scientific75004030
Ammonium-chloride-potassium (ACK) lysing bufferLonza10-548ESterile filtered
Live/dead -efluor506ebioscience65-0866-18 Fixable viability dye
CD11c-PE-cy7eBiosciences25-0114-81
SiglecF-PEBD Pharmingen 552126
MHCII-APCefluor780Biolegend107628
CD3-PE-cy5VWR55-0031-U100
CD19-PE-cy5eBiosciences15-0193-83
CD11b-V450BD Pharmingen 560455
Ly6G-AF700Biolegend127621
Absolute Counting BeadsLife Technologies Europe B.V. C36950
anti-CD16/CD32BD Pharmingen553142
96-well 340 µl storage plate plateFalcon353263V-bottom, natural polypropylene
Flow cytometerBD Biosciences
CatheterBD Biosciences393202

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