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In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
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Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE
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Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis

Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE

In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline

DOI:
10.3791/200889-v

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03:47 min

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December 01, 2023

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, , ,
1Department of Biological Chemistry,Johns Hopkins University School of Medicine, 2Solomon H. Snyder Department of Neuroscience,Johns Hopkins University School of Medicine

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Keywords: SCRAPNoncoding RNA-mRNA Interaction AnalysisMinicondaGitHome Brew Package ManagerMambaConda EnvironmentFASTAAnnotationMiRBaseUCSC Genome BrowserNCBI Genome Data HubAdapter FilePaired-endSingle-endPre-mRNAsTRNAsRNA CleaningReference DirectoryMiRBase AbbreviationReference Genome

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