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Multi-Locus variabele-nummer tandem-herhaling analyse van de vis-pathogene bacterie Yersinia ruckeri door multiplex PCR en capillaire elektroforese
JoVE Journal
Genetica
This content is Free Access.
JoVE Journal Genetica
Multi-locus Variable-number Tandem-repeat Analysis of the Fish-pathogenic Bacterium Yersinia ruckeri by Multiplex PCR and Capillary Electrophoresis
DOI:

10:33 min

June 17, 2019

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Capitoli

  • 00:04Titolo
  • 00:53Bacterial Cultivation and Extraction of Genomic DNA
  • 01:54Multiplex PCR Setup and Cycling Conditions
  • 03:14PCR Amplicon Confirmation by Gel Electrophoresis
  • 04:37Capillary Electrophoresis Setup and Run Conditions
  • 06:06VNTR (Variable-number Tandem-repeat) Size Calling, Repeat Count Calculation and MLVA (Multi-locus Variable-number Tandem-repeat Analysis) Profiling
  • 07:36Minimum Spanning Tree Cluster Analysis of MLVA Data
  • 09:21Results: Gel Electrophoresis, Electropherograms, and Minimum Spanning Tree
  • 10:09Conclusion

Summary

Traduzione automatica

De multi-Locus variabele-aantal tandem-repeat analyse (MLVA) assay hier gepresenteerd maakt goedkope, robuuste en draagbare hoge-resolutie genotypering van de vis-pathogene bacterie Yersinia ruckeri. Beginnend bij zuivere culturen, gebruikt de assay multiplex PCR en capillaire elektroforese om tien-loci MLVA-profielen voor downstreamtoepassingen te produceren.

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