Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Robert C. Moseley; Sophia Campione; Bree Cummins; Francis Motta; Steven B. Haase

doi:10.3791/63084

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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

DOI:

10.3791/63084-v

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10:44 min

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December 07, 2021

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Robert C. Moseley, Sophia Campione, Bree Cummins, Francis Motta, Steven B. Haase

¹Department of Biology,Duke University, ²Department of Mathematical Sciences,Montana State University, ³Department of Mathematical Sciences,Florida Atlantic University

Chapters

00:04Introduction
00:46Node Finding
03:40Edge Finding
05:32Network Finding
08:14Results: Investigating the Core Oscillator Gene Regulatory Network of the Yeast Cell-Cycle
10:06Conclusion

Summary

자동 번역

The Inherent Dynamics Visualizer is an interactive visualization package that connects to a gene regulatory network inference tool for enhanced, streamlined generation of functional network models. The visualizer can be used to make more informed decisions for parameterizing the inference tool, thus increasing confidence in the resulting models.

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

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Chapters

Summary

자동 번역

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