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AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells
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AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells

AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells

DOI:
10.3791/64857-v

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06:03 min

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June 23, 2023

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, , , , , , ,
1Institute of Mathematics and Statistics,University of São Paulo, 2Center for Mathematics, Computing and Cognition,Federal University of ABC, 3Department of Botany, Institute of Biosciences,University of São Paulo, 4Cell Biology and Molecular Genetics Department,University of Maryland, 5Department of Biosciences,University of Milan, 6Department of Physics,Politecnico di Milano

Chapters

  • 00:04Introduction
  • 00:35Interactive Notebook Protocol
  • 04:52Results: Analyzing the Different Fluorescence Image Datasets
  • 05:18Conclusion

Summary

자동 번역

자동 번역

Current methods for analyzing the intracellular dynamics of polarized single cells are often manual and lack standardization. This manuscript introduces a novel image analysis pipeline for automating midline extraction of single polarized cells and quantifying spatiotemporal behavior from time lapses in a user-friendly online interface.

Tags

AMEBaSMidline ExtractionBackground SubtractionRatiometric FluorescenceTime-lapsePolarized Single CellsAutomationCell SegmentationCell Midline TracingSkeletonizationLinear ExtrapolationInterpolation

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