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Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench
JoVE Journal
Biologia
This content is Free Access.
JoVE Journal Biologia
Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench
DOI:

11:38 min

August 23, 2017

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Capítulos

  • 00:05Título
  • 00:53Preparing the Workplace, Data Representation, and Generating Appropriate Super-regions
  • 03:19Introduction to Annotation
  • 04:12Segmentation Using Model Training
  • 05:41Segmentation Using Super-regions
  • 06:42Classifiction and Analysis of Data Objects Based on Inherent Characteristics
  • 09:00Results: Model Training, Super-region Segmentation, and Label Splitting Using the SuRVoS Workbench
  • 10:55Conclusion

Summary

Tadução automática

Segmentation of three-dimensional data from many imaging techniques is a major bottleneck in analysis of complex biological systems. Here, we describe the use of SuRVoS Workbench to semi-automatically segment volumetric data at various length-scales using example datasets from cryo-electron tomography, cryo soft X-ray tomography, and phase contrast X-ray tomography techniques.

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