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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
JoVE Journal
Biologia
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JoVE Journal Biologia
Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
DOI:

10:44 min

December 07, 2021

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Capítulos

  • 00:04Introduction
  • 00:46Node Finding
  • 03:40Edge Finding
  • 05:32Network Finding
  • 08:14Results: Investigating the Core Oscillator Gene Regulatory Network of the Yeast Cell-Cycle
  • 10:06Conclusion

Summary

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The Inherent Dynamics Visualizer is an interactive visualization package that connects to a gene regulatory network inference tool for enhanced, streamlined generation of functional network models. The visualizer can be used to make more informed decisions for parameterizing the inference tool, thus increasing confidence in the resulting models.

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