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细菌种群中分层基因型和辅助基因组位点的启发式挖掘

JoVE Journal
Genética

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JoVE Journal Genética

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

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细菌种群中分层基因型和辅助基因组位点的启发式挖掘

DOI:

10.3791/63115-v

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08:03 min

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December 07, 2021

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Natasha Pavlovikj*¹, Joao Carlos Gomes-Neto*^2,3, Andrew K. Benson³

¹Department of Computer Science and Engineering,University of Nebraska-Lincoln, ²Department of Food Science and Technology,University of Nebraska-Lincoln, ³Nebraska Food for Health Center,University of Nebraska-Lincoln

Capítulos

00:04Introduction
02:23Conduct Analyses and Generate Visualizations
05:17Results: Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Salmonella enterica
06:58Conclusion

Summary

Tadução automática

该分析计算平台为对细菌种群基因组学感兴趣的微生物学家，生态学家和流行病学家提供实用指导。具体而言，这里介绍的工作展示了如何执行：i）分层基因型的系统发育指导映射;ii）基于频率的基因型分析;iii）亲属关系和克隆性分析;iv）识别谱系分化附属位点。

Tags

Keywords: Heuristic Mining Hierarchical Genotypes Accessory Genome Loci Bacterial Populations ProkEvo Computational Platform Scalable Analysis Pan-genomic Content Genotype Mapping Pathogenic Lineages Public Health Surveillance Bacterial Population Genomics Gigi Tree Phylogenetic Tree Data Aggregation

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