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Biology
Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE
Published: December 01, 2023
doi:
10.3791/200889
Sreenivas Eadara
,
Xinbei Li
,
Emily A. Eiss
,
Mollie K. Meffert
2
1
Department of Biological Chemistry
,
Johns Hopkins University School of Medicine
,
2
Solomon H. Snyder Department of Neuroscience
,
Johns Hopkins University School of Medicine
Tags
Keywords: SCRAP
Noncoding RNA-mRNA Interaction Analysis
Miniconda
Git
Home Brew Package Manager
Mamba
Conda Environment
FASTA
Annotation
MiRBase
UCSC Genome Browser
NCBI Genome Data Hub
Adapter File
Paired-end
Single-end
Pre-mRNAs
TRNAs
RNA Cleaning
Reference Directory
MiRBase Abbreviation
Reference Genome
check_url/200889?article_type=t
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Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis.
J. Vis. Exp.
(Pending Publication), e200889, doi:10.3791/200889 (2023).
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