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Biology
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In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
/
Appel de pic et annotation dans SCRAP pour les petits ARN non codants : études d’interaction de l’ARN cible
JoVE Journal
Biology
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JoVE Journal
Biology
Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies
Please note that all translations are automatically generated.
Click here for the English version.
Appel de pic et annotation dans SCRAP pour les petits ARN non codants : études d’interaction de l’ARN cible
In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
DOI:
10.3791/200890-v
•
02:13 min
•
December 01, 2023
•
Sreenivas Eadara
,
Xinbei Li
,
Emily A. Eiss
,
Mollie K. Meffert
2
1
Department of Biological Chemistry
,
Johns Hopkins University School of Medicine
,
2
Solomon H. Snyder Department of Neuroscience
,
Johns Hopkins University School of Medicine
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Peak_calling_directory=/path/to/sample/folders Adapter_file=/path/to/adapter.fasta Min_reads=10 Min_samples=2 Require_same_family=True Reference_dir=/path/to/reference/directory Mirbase_abbr=hsa Genome_abbr=hg38 Peak_file=/path/to/resulting/peaks.bed Bam_file=/path/to/merged.bam Sorted_bam=/path/to/sorted.bam Indexed_bam=/path/to/sorted.bam.bai
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