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Genomic MRI – a Public Resource for Studying Sequence Patterns within Genomic DNA
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Biology
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JoVE Journal Biology
Genomic MRI – a Public Resource for Studying Sequence Patterns within Genomic DNA

Genomic MRI – a Public Resource for Studying Sequence Patterns within Genomic DNA

DOI:
10.3791/2663-v

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12:36 min

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May 09, 2011

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, ,
1Department of Medicine,University of Toledo Health Science Campus

Chapters

  • 00:05Title
  • 02:04Preparation and Input Sequence Upload
  • 03:50Short-Range Inhomogeneity (SRI) and Random Sequence Generation
  • 06:20Analysis of Mid-Range Inhomogeneity (MRI)
  • 09:38Using Genomic MRI to Identify MRI Patterns
  • 11:00Viewing Saved Data
  • 12:20Conclusion

Summary

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We present a public computational web site for the analysis of genomic sequences. It detects DNA sequence patterns with various non-random nucleotide compositions. This resource also generates randomized sequences with diverse levels of complexity.

Tags

Genomic MRISequence PatternsNon-coding Genomic RegionsIntergenic AreasIntronsUntranslated SegmentsMid-Range Inhomogeneity (MRI) RegionsNucleotide CompositionBase EnrichmentNon-B-form DNA StructuresGene Expression RegulationRecombinationGenetic ProcessesFixation BiasSequence InhomogeneityComputational AnalysisMRI PatternsRandomized SequencesNatural Input DNA SequencesNon-coding DNA Examination

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