Johannes Krause

Max-Planck Institute for Evolutionary Anthropology, Leipzig

Affiliated withMax-Planck Institute for Evolutionary Anthropology, Leipzig Max Planck Institute for the Science of Human History Max Planck Institute for Evolutionary Anthropology

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 41	2009
Publication title Cited by 9	2021

Other Publications

Article	Year
Genetic analyses from ancient DNA. Annual review of genetics\| PubMed ID: 15568989	2004
Genomic sequencing of Pleistocene cave bears. Science (New York, N.Y.)\| PubMed ID: 15933159	2005
Functional analysis of human and chimpanzee promoters. Genome biology\| PubMed ID: 15998446	2005
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature\| PubMed ID: 16362058	2006
Mitochondrial DNA of an Iberian Neandertal suggests a population affinity with other European Neandertals. Current biology : CB\| PubMed ID: 16920606	2006
Analysis of one million base pairs of Neanderthal DNA. Nature\| PubMed ID: 17108958	2006
Sequencing and analysis of Neanderthal genomic DNA. Science (New York, N.Y.)\| PubMed ID: 17110569	2006
Multiplex amplification of ancient DNA. Nature protocols\| PubMed ID: 17406302	2006
Patterns of damage in genomic DNA sequences from a Neandertal. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17715061	2007
Neanderthals in central Asia and Siberia. Nature\| PubMed ID: 17914357	2007
The derived FOXP2 variant of modern humans was shared with Neandertals. Current biology : CB\| PubMed ID: 17949978	2007
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic acids research\| PubMed ID: 18084031	2008
Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC evolutionary biology\| PubMed ID: 18662376	2008
A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell\| PubMed ID: 18692465	2008
Genetic characterization of the ABO blood group in Neandertals. BMC evolutionary biology\| PubMed ID: 19108732	2008
Linkage disequilibrium extends across putative selected sites in FOXP2. Molecular biology and evolution\| PubMed ID: 19608635	2009
Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science (New York, N.Y.)\| PubMed ID: 19608918	2009
The Neandertal genome and ancient DNA authenticity. The EMBO journal\| PubMed ID: 19661919	2009
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic acids research\| PubMed ID: 20028723	2010
A complete mtDNA genome of an early modern human from Kostenki, Russia. Current biology : CB\| PubMed ID: 20045327	2010
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature\| PubMed ID: 20336068	2010
A draft sequence of the Neandertal genome. Science (New York, N.Y.)\| PubMed ID: 20448178	2010
Targeted investigation of the Neandertal genome by array-based sequence capture. Science (New York, N.Y.)\| PubMed ID: 20448179	2010
Technical aspects of the WaveLight FS200 femtosecond laser. Journal of refractive surgery (Thorofare, N.J. : 1995)\| PubMed ID: 20954680	2010
Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature\| PubMed ID: 21179161	2010
Virus progeny of murine cytomegalovirus bacterial artificial chromosome pSM3fr show reduced growth in salivary Glands due to a fixed mutation of MCK-2. Journal of virology\| PubMed ID: 21813614	2011
Learning about human population history from ancient and modern genomes. Nature reviews. Genetics\| PubMed ID: 21850041	2011
Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 21876176	2011
A draft genome of Yersinia pestis from victims of the Black Death. Nature\| PubMed ID: 21993626	2011
Tunable narrowband THz pulse generation in scalable large area photoconductive antennas. Optics express\| PubMed ID: 21996852	2011
Rewriting the Central European Early Bronze Age Chronology: Evidence from Large-Scale Radiocarbon Dating. PloS one\| PubMed ID: 26488413	2015
Genome-wide patterns of selection in 230 ancient Eurasians. Nature\| PubMed ID: 26595274	2015
The 5300-year-old Helicobacter pylori genome of the Iceman. Science (New York, N.Y.)\| PubMed ID: 26744403	2016
Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife\| PubMed ID: 26795402	2016
Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe. Current biology : CB\| PubMed ID: 26853362	2016
The genetic history of Ice Age Europe. Nature\| PubMed ID: 27135931	2016
Genetic Time Travel. Genetics\| PubMed ID: 27183562	2016
Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics. Cell host & microbe\| PubMed ID: 27281573	2016
Neandertal cannibalism and Neandertal bones used as tools in Northern Europe. Scientific reports\| PubMed ID: 27381450	2016
Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nature genetics\| PubMed ID: 27428749	2016
A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim. Molecular biology and evolution\| PubMed ID: 27578768	2016
Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe X-ray imaging. Scientific reports\| PubMed ID: 27615365	2016
Genomic insights into the peopling of the Southwest Pacific. Nature\| PubMed ID: 27698418	2016
A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice. PloS one\| PubMed ID: 27706187	2016
Early cave art and ancient DNA record the origin of European bison. Nature communications\| PubMed ID: 27754477	2016
Genetic structure of Tibetan populations in Gansu revealed by forensic STR loci. Scientific reports\| PubMed ID: 28112227	2017
A Robust Framework for Microbial Archaeology. Annual review of genomics and human genetics\| PubMed ID: 28460196	2017
Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods. Nature communications\| PubMed ID: 28556824	2017
Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals. Nature communications\| PubMed ID: 28675384	2017
Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication. Trends in genetics : TIG\| PubMed ID: 28688671	2017
Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science (New York, N.Y.)\| PubMed ID: 28774930	2017
Genetic origins of the Minoans and Mycenaeans. Nature\| PubMed ID: 28783727	2017
Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PloS one\| PubMed ID: 28817590	2017
Female exogamy and gene pool diversification at the transition from the Final Neolithic to the Early Bronze Age in central Europe. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28874531	2017
Reconstructing Prehistoric African Population Structure. Cell\| PubMed ID: 28938123	2017
The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age. Scientific reports\| PubMed ID: 29142317	2017
The Stone Age Plague and Its Persistence in Eurasia. Current biology : CB\| PubMed ID: 29174893	2017
Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes. Scientific reports\| PubMed ID: 29255197	2017
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature ecology & evolution\| PubMed ID: 29335577	2018
The genetic prehistory of the Baltic Sea region. Nature communications\| PubMed ID: 29382937	2018
Inferring genetic origins and phenotypic traits of George Bähr, the architect of the Dresden Frauenkirche. Scientific reports\| PubMed ID: 29391530	2018
The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS genetics\| PubMed ID: 29432421	2018
The genomic history of southeastern Europe. Nature\| PubMed ID: 29466330	2018
The Beaker phenomenon and the genomic transformation of northwest Europe. Nature\| PubMed ID: 29466337	2018
Ancient genomes revisit the ancestry of domestic and Przewalski's horses. Science (New York, N.Y.)\| PubMed ID: 29472442	2018
Language continuity despite population replacement in Remote Oceania. Nature ecology & evolution\| PubMed ID: 29487365	2018
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science (New York, N.Y.)\| PubMed ID: 29545507	2018
Reconstructing the genetic history of late Neanderthals. Nature\| PubMed ID: 29562232	2018
Author Correction: The genetic prehistory of the Baltic Sea region. Nature communications\| PubMed ID: 29643405	2018
Neolithic and medieval virus genomes reveal complex evolution of hepatitis B. eLife\| PubMed ID: 29745896	2018
Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS pathogens\| PubMed ID: 29746563	2018
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature communications\| PubMed ID: 29884871	2018
Genetic diversity of the HLA system in human populations from the Sierra (Andean), Oriente (Amazonian) and Costa (Coastal) regions of Ecuador. Human immunology\| PubMed ID: 29908213	2018
Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains. PLoS neglected tropical diseases\| PubMed ID: 29927932	2018
Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific reports\| PubMed ID: 29959351	2018
Reconciling material cultures in archaeology with genetic data: The nomenclature of clusters emerging from archaeogenomic analysis. Scientific reports\| PubMed ID: 30158639	2018
Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard. Science advances\| PubMed ID: 30191172	2018
Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature communications\| PubMed ID: 30206220	2018
Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging microbes & infections\| PubMed ID: 30228266	2018
Ratio of mitochondrial to nuclear DNA affects contamination estimates in ancient DNA analysis. Scientific reports\| PubMed ID: 30232341	2018
Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 30397125	2018
Reconstructing the Deep Population History of Central and South America. Cell\| PubMed ID: 30415837	2018
Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature communications\| PubMed ID: 30479341	2018
Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions. Nature communications\| PubMed ID: 30713341	2019
Stable isotopes reveal patterns of diet and mobility in the last Neandertals and first modern humans in Europe. Scientific reports\| PubMed ID: 30872714	2019
Survival of Late Pleistocene Hunter-Gatherer Ancestry in the Iberian Peninsula. Current biology : CB\| PubMed ID: 30880015	2019
Late Pleistocene human genome suggests a local origin for the first farmers of central Anatolia. Nature communications\| PubMed ID: 30890703	2019
Ancient pathogen genomics as an emerging tool for infectious disease research. Nature reviews. Genetics\| PubMed ID: 30953039	2019
The genetic history of admixture across inner Eurasia. Nature ecology & evolution\| PubMed ID: 31036896	2019
Ancient genomes from across Western Europe reveal early diversification during the First Pandemic (541-750). Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 31164419	2019
Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America. Nature\| PubMed ID: 31168094	2019
Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science advances\| PubMed ID: 31249872	2019
Ancient DNA sheds light on the genetic origins of early Iron Age Philistines. Science advances\| PubMed ID: 31281897	2019
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual review of microbiology\| PubMed ID: 31283430	2019
Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan. Current biology : CB\| PubMed ID: 31353181	2019
Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear. Scientific reports\| PubMed ID: 31417104	2019
Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature communications\| PubMed ID: 31578321	2019
Kinship-based social inequality in Bronze Age Europe. Science (New York, N.Y.)\| PubMed ID: 31601705	2019
Human mitochondrial DNA lineages in Iron-Age Fennoscandia suggest incipient admixture and eastern introduction of farming-related maternal ancestry. Scientific reports\| PubMed ID: 31729399	2019
Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular ecology\| PubMed ID: 31840921	2020
HOPS: automated detection and authentication of pathogen DNA in archaeological remains. Genome biology\| PubMed ID: 31842945	2019
Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia. Nature communications\| PubMed ID: 32094358	2020
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature ecology & evolution\| PubMed ID: 32094538	2020
Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature communications\| PubMed ID: 32313080	2020
Origin and Health Status of First-Generation Africans from Early Colonial Mexico. Current biology : CB\| PubMed ID: 32359431	2020
A Paleogenomic Reconstruction of the Deep Population History of the Andes. Cell\| PubMed ID: 32386546	2020
Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia. Cell\| PubMed ID: 32437661	2020
Genomic History of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus. Cell\| PubMed ID: 32470401	2020
Ancient genomes from northern China suggest links between subsistence changes and human migration. Nature communications\| PubMed ID: 32483115	2020
Genomic insights into the early peopling of the Caribbean. Science (New York, N.Y.)\| PubMed ID: 32499399	2020
Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers. Science advances\| PubMed ID: 32523989	2020
Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa. Science advances\| PubMed ID: 32582847	2020
An ancient view on host pathogen interaction across time and space. Current opinion in immunology\| PubMed ID: 32603999	2020
The immunogenetic diversity of the HLA system in Mexico correlates with underlying population genetic structure. Human immunology\| PubMed ID: 32651014	2020
Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern Europe. Current biology : CB\| PubMed ID: 32795443	2020
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. BMC biology\| PubMed ID: 32859198	2020
Author Correction: Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature communications\| PubMed ID: 32938921	2020
Identification of African swine fever virus-like elements in the soft tick genome provides insights into the virus' evolution. BMC biology\| PubMed ID: 33032594	2020
A systematic investigation of human DNA preservation in medieval skeletons. Scientific reports\| PubMed ID: 33106554	2020
Comparison of target enrichment strategies for ancient pathogen DNA. BioTechniques\| PubMed ID: 33135465	2020
A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe. Cell\| PubMed ID: 33157037	2020
Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry. Communications biology\| PubMed ID: 33495542	2021
Genomic insights into the formation of human populations in East Asia. Nature\| PubMed ID: 33618348	2021
Ancient genomic time transect from the Central Asian Steppe unravels the history of the Scythians. Science advances\| PubMed ID: 33771866	2021
A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia. Nature ecology & evolution\| PubMed ID: 33828249	2021
The evolution and changing ecology of the African hominid oral microbiome. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 33972424	2021
Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval trade city Lübeck. iScience\| PubMed ID: 33997698	2021
Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes. Molecular biology and evolution\| PubMed ID: 34002224	2021
Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: Integration of isotopic and genomic evidence. PloS one\| PubMed ID: 34191795	2021
Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe. Scientific reports\| PubMed ID: 34294811	2021
Dynamic changes in genomic and social structures in third millennium BCE central Europe. Science advances\| PubMed ID: 34433570	2021
Genome of a middle Holocene hunter-gatherer from Wallacea. Nature\| PubMed ID: 34433944	2021
A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road. PLoS pathogens\| PubMed ID: 34547027	2021
The origin and legacy of the Etruscans through a 2000-year archeogenomic time transect. Science advances\| PubMed ID: 34559560	2021
Performance and automation of ancient DNA capture with RNA hyRAD probes. Molecular ecology resources\| PubMed ID: 34582623	2021
Genome-wide autosomal, mtDNA, and Y chromosome analysis of King Bela III of the Hungarian Arpad dynasty. Scientific reports\| PubMed ID: 34584164	2021
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes. BMC biology\| PubMed ID: 34610848	2021
Ten millennia of hepatitis B virus evolution. Science (New York, N.Y.)\| PubMed ID: 34618559	2021
Ethics of DNA research on human remains: five globally applicable guidelines. Nature\| PubMed ID: 34671160	2021
The origins and spread of domestic horses from the Western Eurasian steppes. Nature\| PubMed ID: 34671162	2021
The genomic origins of the Bronze Age Tarim Basin mummies. Nature\| PubMed ID: 34707286	2021
Genomic transformation and social organization during the Copper Age-Bronze Age transition in southern Iberia. Science advances\| PubMed ID: 34788096	2021