Siu Kwan Sze

Division of Structural Biology and Biochemistry, Nanyang Technological University

Affiliated withNanyang Technological University

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 6	2017

Other Publications

Article	Year
Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 11842225	2002
Secondary and tertiary structures of gaseous protein ions characterized by electron capture dissociation mass spectrometry and photofragment spectroscopy. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 12444260	2002
Top down characterization of secreted proteins from Mycobacterium tuberculosis by electron capture dissociation mass spectrometry. Journal of the American Society for Mass Spectrometry\| PubMed ID: 12648932	2003
Plasma electron capture dissociation for the characterization of large proteins by top down mass spectrometry. Analytical chemistry\| PubMed ID: 12705591	2003
Detection of four oxidation sites in viral prolyl-4-hydroxylase by top-down mass spectrometry. Protein science : a publication of the Protein Society\| PubMed ID: 14500890	2003
Nanosecond laser-induced photochemical oxidation method for protein surface mapping with mass spectrometry. Analytical chemistry\| PubMed ID: 16159110	2005
Microwave-assisted specific chemical digestion for rapid protein identification. Proteomics\| PubMed ID: 16342144	2006
Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells. The Journal of biological chemistry\| PubMed ID: 16840789	2006
Automated intensity descent algorithm for interpretation of complex high-resolution mass spectra. Analytical chemistry\| PubMed ID: 16841924	2006
Cyclooxygenase-2 inhibition increases mortality, enhances left ventricular remodeling, and impairs systolic function after myocardial infarction in the pig. Circulation\| PubMed ID: 17210840	2007
Elucidating the secretion proteome of human embryonic stem cell-derived mesenchymal stem cells. Molecular & cellular proteomics : MCP\| PubMed ID: 17565974	2007
Novel polymer composite to eliminate background matrix ions in matrix assisted laser desorption/ionization-mass spectrometry. The Analyst\| PubMed ID: 18318283	2007
A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation/enrichment. Journal of proteome research\| PubMed ID: 18828627	2008
Hybridization of pulsed-Q dissociation and collision-activated dissociation in linear ion trap mass spectrometer for iTRAQ quantitation. Journal of proteome research\| PubMed ID: 18837533	2008
One-step procedure for peptide extraction from in-gel digestion sample for mass spectrometric analysis. Analytical chemistry\| PubMed ID: 18986172	2008
Elucidating the structure of cyclotides by partial acid hydrolysis and LC-MS/MS analysis. Analytical chemistry\| PubMed ID: 19178340	2009
Elucidating in vivo structural dynamics in integral membrane protein by hydroxyl radical footprinting. Molecular & cellular proteomics : MCP\| PubMed ID: 19473960	2009
Identification of novel functional differences in monocyte subsets using proteomic and transcriptomic methods. Journal of proteome research\| PubMed ID: 19514703	2009
Phenotyping of an in vitro model of ischemic penumbra by iTRAQ-based shotgun quantitative proteomics. Journal of proteome research\| PubMed ID: 19916522	2010
Local atherosclerotic plaques are a source of prognostic biomarkers for adverse cardiovascular events. Arteriosclerosis, thrombosis, and vascular biology\| PubMed ID: 20018935	2010
Simultaneous characterization of glyco- and phosphoproteomes of mouse brain membrane proteome with electrostatic repulsion hydrophilic interaction chromatography. Molecular & cellular proteomics : MCP\| PubMed ID: 20047950	2010
Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes. Molecular & cellular proteomics : MCP\| PubMed ID: 20124223	2010
Quantitative iTRAQ secretome analysis of cellulolytic Thermobifida fusca. Journal of proteome research\| PubMed ID: 20408570	2010
Novel application of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) in shotgun proteomics: comprehensive profiling of rat kidney proteome. Journal of proteome research\| PubMed ID: 20450224	2010
Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach. Proteomics\| PubMed ID: 20486119	2010
Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes. Journal of proteome research\| PubMed ID: 20545367	2010
High myeloid-related protein: 8/14 levels are related to an increased risk of cardiovascular events after carotid endarterectomy. Stroke; a journal of cerebral circulation\| PubMed ID: 20671258	2010
Quantitative proteomics discloses MET expression in mitochondria as a direct target of MET kinase inhibitor in cancer cells. Molecular & cellular proteomics : MCP\| PubMed ID: 20713453	2010
Angiopoietin-like 4 interacts with matrix proteins to modulate wound healing. The Journal of biological chemistry\| PubMed ID: 20729546	2010
Global molecular dysfunctions in gastric cancer revealed by an integrated analysis of the phosphoproteome and transcriptome. Cellular and molecular life sciences : CMLS\| PubMed ID: 20953656	2011
Adipocyte fatty acid binding protein in atherosclerotic plaques is associated with local vulnerability and is predictive for the occurrence of adverse cardiovascular events. European heart journal\| PubMed ID: 21059735	2011
CDK5RAP2 stimulates microtubule nucleation by the gamma-tubulin ring complex. The Journal of cell biology\| PubMed ID: 21135143	2010
Simultaneous analysis of proteome, phospho- and glycoproteome of rat kidney tissue with electrostatic repulsion hydrophilic interaction chromatography. PloS one\| PubMed ID: 21373199	2011
Quantitative time-course profiling of parasite and host cell proteins in the human malaria parasite Plasmodium falciparum. Molecular & cellular proteomics : MCP\| PubMed ID: 21558492	2011
Investigation of POPX2 phosphatase functions by comparative phosphoproteomic analysis. Proteomics\| PubMed ID: 21656682	2011
Comparative proteome analysis of 3T3-L1 adipocyte differentiation using iTRAQ-coupled 2D LC-MS/MS. Journal of cellular biochemistry\| PubMed ID: 21678470	2011
iTRAQ-based quantitative proteomic analysis of Thermobifida fusca reveals metabolic pathways of cellulose utilization. Journal of proteomics\| PubMed ID: 21704745	2011
Detection, evaluation and minimization of nonenzymatic deamidation in proteomic sample preparation. Molecular & cellular proteomics : MCP\| PubMed ID: 21784994	2011
Proteomic analysis of pH and strains dependent protein secretion of Trichoderma reesei. Journal of proteome research\| PubMed ID: 21879708	2011
Proteome profiling reveals potential cellular targets of staurosporine using a clickable cell-permeable probe. Chemical communications (Cambridge, England)\| PubMed ID: 21922114	2011
iTRAQ-based quantitative secretome analysis of Phanerochaete chrysosporium. Journal of proteomics\| PubMed ID: 21945728	2011
Elucidating structural dynamics of integral membrane proteins on native cell surface by hydroxyl radical footprinting and nano LC-MS/MS. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 21948423	2011
Application of electrostatic repulsion hydrophilic interaction chromatography to the characterization of proteome, glycoproteome, and phosphoproteome using nano LC-MS/MS. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 21948424	2011
Quantitative neuroproteomics of an in vivo rodent model of focal cerebral ischemia/reperfusion injury reveals a temporal regulation of novel pathophysiological molecular markers. Journal of proteome research\| PubMed ID: 21950801	2011
Myostatin induces degradation of sarcomeric proteins through a Smad3 signaling mechanism during skeletal muscle wasting. Molecular endocrinology (Baltimore, Md.)\| PubMed ID: 21964591	2011
Electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus strong cation exchange (SCX) for fractionation of iTRAQ-labeled peptides. Journal of proteome research\| PubMed ID: 22014306	2011
Quantitative proteomics reveals new insights into erythrocyte invasion by Plasmodium falciparum. Molecular & cellular proteomics : MCP\| PubMed ID: 22023809	2012
Phenotyping of tianma-stimulated differentiated rat neuronal b104 cells by quantitative proteomics. Neuro-Signals\| PubMed ID: 22094351	2012
Quantitative proteomic analysis of lignocellulolytic enzymes by Phanerochaete chrysosporium on different lignocellulosic biomass. Journal of proteomics\| PubMed ID: 22146477	2012
Neuronal p60TRP expression modulates cardiac capacity. Journal of proteomics\| PubMed ID: 22172954	2012
Enhanced Separation and Characterization of Deamidated Peptides with RP-ERLIC-Based Multidimensional Chromatography Coupled with Tandem Mass Spectrometry. Journal of proteome research\| PubMed ID: 22239700	2012
Synergism between curdlan and GM-CSF confers a strong inflammatory signature to dendritic cells. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 22250091	2012
Structure of a novel phosphotyrosine-binding domain in Hakai that targets E-cadherin. The EMBO journal\| PubMed ID: 22252131	2012
Metabolic adaptation to a disruption in oxygen supply during myocardial ischemia and reperfusion is underpinned by temporal and quantitative changes in the cardiac proteome. Journal of proteome research\| PubMed ID: 22352837	2012
Quantitative secretomic analysis of Trichoderma reesei strains reveals enzymatic composition for lignocellulosic biomass degradation. Molecular & cellular proteomics : MCP\| PubMed ID: 22355001	2012
New insights into the brain protein metabolism of Gastrodia elata-treated rats by quantitative proteomics. Journal of proteomics\| PubMed ID: 22402058	2012
Multidimensional identification of tissue biomarkers of gastric cancer. Journal of proteome research\| PubMed ID: 22533479	2012
Label free quantitative proteomic analysis of secretome by Thermobifida fusca on different lignocellulosic biomass. Journal of proteomics\| PubMed ID: 22575269	2012
Myostatin is a novel tumoral factor that induces cancer cachexia. The Biochemical journal\| PubMed ID: 22621320	2012
Identification of atrogin-1-targeted proteins during the myostatin-induced skeletal muscle wasting. American journal of physiology. Cell physiology\| PubMed ID: 22673621	2012
Parasite-based screening and proteome profiling reveal orlistat, an FDA-approved drug, as a potential anti Trypanosoma brucei agent. Chemistry (Weinheim an der Bergstrasse, Germany)\| PubMed ID: 22674877	2012
Tianma modulates proteins with various neuro-regenerative modalities in differentiated human neuronal SH-SY5Y cells. Neurochemistry international\| PubMed ID: 22710396	2012
Gastrodia elata Blume (tianma) mobilizes neuro-protective capacities. International journal of biochemistry and molecular biology\| PubMed ID: 22773961	2012
Tianma modulates blood vessel tonicity. The open biochemistry journal\| PubMed ID: 22787517	2012
Elucidating the temporal dynamics of chromatin-associated protein release upon DNA digestion by quantitative proteomic approach. Journal of proteomics\| PubMed ID: 22796351	2012
Proteolytic Potential of the MSC Exosome Proteome: Implications for an Exosome-Mediated Delivery of Therapeutic Proteasome. International journal of proteomics\| PubMed ID: 22852084	2012
Quantitative proteomic analysis of secretome of microbial consortium during saw dust utilization. Journal of proteomics\| PubMed ID: 22992538	2012
Hypoxia activated EGFR signaling induces epithelial to mesenchymal transition (EMT). PloS one\| PubMed ID: 23185433	2012
Hypoxia modulates A431 cellular pathways association to tumor radioresistance and enhanced migration revealed by comprehensive proteomic and functional studies. Molecular & cellular proteomics : MCP\| PubMed ID: 23204318	2013
Deletion of Synechocystis sp. PCC6803 Leader Peptidase LepB1 Affects Photosynthetic Complexes and Respiration. Molecular & cellular proteomics : MCP\| PubMed ID: 23358502	2013
Brain-site-specific proteome changes induced by neuronal P60TRP expression. Neuro-Signals\| PubMed ID: 23391701	2013
Microvesicle protein levels are associated with increased risk for future vascular events and mortality in patients with clinically manifest vascular disease. International journal of cardiology\| PubMed ID: 23484740	2013
Comparative evaluation of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) and high-pH reversed phase (Hp-RP) chromatography in profiling of rat kidney proteome. Journal of proteomics\| PubMed ID: 23486160	2013
Scalable and effective enrichment of semiconducting single-walled carbon nanotubes by a dual selective naphthalene-based azo dispersant. Journal of the American Chemical Society\| PubMed ID: 23521315	2013
Protein abundance in multiplexed samples (PAMUS) for quantitation of Trichoderma reesei secretome. Journal of proteomics\| PubMed ID: 23562779	2013
Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase. Journal of proteome research\| PubMed ID: 23621870	2013
Proteomic analysis of temperature dependent extracellular proteins from Aspergillus fumigatus grown under solid-state culture condition. Journal of proteome research\| PubMed ID: 23647126	2013
Design and synthesis of minimalist terminal alkyne-containing diazirine photo-crosslinkers and their incorporation into kinase inhibitors for cell- and tissue-based proteome profiling. Angewandte Chemie (International ed. in English)\| PubMed ID: 23754342	2013
Quantitative clinical proteomic study of autopsied human infarcted brain specimens to elucidate the deregulated pathways in ischemic stroke pathology. Journal of proteomics\| PubMed ID: 24007662	2013
Brain site-specific proteome changes in aging-related dementia. Experimental & molecular medicine\| PubMed ID: 24008896	2013
Serum extracellular vesicle protein levels are associated with acute coronary syndrome. European heart journal. Acute cardiovascular care\| PubMed ID: 24062934	2013
Small molecule probe suitable for in situ profiling and inhibition of protein disulfide isomerase. ACS chemical biology\| PubMed ID: 24070012	2013
Correction of errors in tandem mass spectrum extraction enhances phosphopeptide identification. Journal of proteome research\| PubMed ID: 24147958	2013
Acetylation at lysine 183 of progesterone receptor by p300 accelerates DNA binding kinetics and transactivation of direct target genes. The Journal of biological chemistry\| PubMed ID: 24302725	2014
Quantitative profiling of the rat heart myoblast secretome reveals differential responses to hypoxia and re-oxygenation stress. Journal of proteomics\| PubMed ID: 24412200	2014
Lysine methylation of progesterone receptor at activation function 1 regulates both ligand-independent activity and ligand sensitivity of the receptor. The Journal of biological chemistry\| PubMed ID: 24415758	2014
Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia. Journal of proteomics\| PubMed ID: 24448401	2014
Plasma biomarker discovery in preeclampsia using a novel differential isolation technology for circulating extracellular vesicles. American journal of obstetrics and gynecology\| PubMed ID: 24657793	2014
LEO1 is regulated by PRL-3 and mediates its oncogenic properties in acute myelogenous leukemia. Cancer research\| PubMed ID: 24686170	2014
Discovery of prognostic biomarker candidates of lacunar infarction by quantitative proteomics of microvesicles enriched plasma. PloS one\| PubMed ID: 24752076	2014
Deep proteomic profiling of human carotid atherosclerotic plaques using multidimensional LC-MS/MS. Proteomics. Clinical applications\| PubMed ID: 24828403	2014
Profiling of the Chromatin-associated Proteome Identifies HP1BP3 as a Novel Regulator of Cell Cycle Progression. Molecular & cellular proteomics : MCP\| PubMed ID: 24830416	2014
Hypoxia-induced changes to integrin α 3 glycosylation facilitate invasion in epidermoid carcinoma cell line A431. Molecular & cellular proteomics : MCP\| PubMed ID: 25078904	2014
Quantitative profiling of chromatome dynamics reveals a novel role for HP1BP3 in hypoxia-induced oncogenesis. Molecular & cellular proteomics : MCP\| PubMed ID: 25100860	2014
iTRAQ quantitative clinical proteomics revealed role of Na(+)K(+)-ATPase and its correlation with deamidation in vascular dementia. Journal of proteome research\| PubMed ID: 25152327	2014
Study of Phanerochaete chrysosporium secretome revealed protein glycosylation as a substrate-dependent post-translational modification. Journal of proteome research\| PubMed ID: 25162795	2014
Proteomic analysis of protein deamidation. Current protocols in protein science\| PubMed ID: 25367007	2014
Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle. BMC genomics\| PubMed ID: 25373614	2014
Evaluation of the effect of trypsin digestion buffers on artificial deamidation. Journal of proteome research\| PubMed ID: 25495137	2015
Temporal lobe proteins implicated in synaptic failure exhibit differential expression and deamidation in vascular dementia. Neurochemistry international\| PubMed ID: 25497727	2015
Multiplex imaging and cellular target identification of kinase inhibitors via an affinity-based proteome profiling approach. Scientific reports\| PubMed ID: 25579846	2015
Quantitative proteomic study of Aspergillus Fumigatus secretome revealed deamidation of secretory enzymes. Journal of proteomics\| PubMed ID: 25724730	2015
The methyltransferase Ezh2 controls cell adhesion and migration through direct methylation of the extranuclear regulatory protein talin. Nature immunology\| PubMed ID: 25751747	2015
Differential association of chromatin proteins identifies BAF60a/SMARCD1 as a regulator of embryonic stem cell differentiation. Cell reports\| PubMed ID: 25818293	2015
Simultaneous Enrichment of Plasma Soluble and Extracellular Vesicular Glycoproteins Using Prolonged Ultracentrifugation-Electrostatic Repulsion-hydrophilic Interaction Chromatography (PUC-ER... Molecular & cellular proteomics : MCP\| PubMed ID: 25862729	2015
Improving Blood Plasma Glycoproteome Coverage by Coupling Ultracentrifugation Fractionation to Electrostatic Repulsion-Hydrophilic Interaction Chromatography Enrichment. Journal of proteome research\| PubMed ID: 26044363	2015
Data for iTRAQ secretomic analysis of Aspergillus fumigatus in response to different carbon sources. Data in brief\| PubMed ID: 26217740	2015
Uncovering Neurodegenerative Protein Modifications via Proteomic Profiling. International review of neurobiology\| PubMed ID: 26315763	2015
Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells. Genome biology\| PubMed ID: 26415775	2015
Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR). Scientific reports\| PubMed ID: 26419333	2015
The diagnostic and prognostic potential of plasma extracellular vesicles for cardiovascular disease. Expert review of molecular diagnostics\| PubMed ID: 26535492	2015
Cysteine-Rich Peptide Family with Unusual Disulfide Connectivity from Jasminum sambac. Journal of natural products\| PubMed ID: 26555361	2015
Recent advances in mass spectrometric analysis of protein deamidation. Mass spectrometry reviews\| PubMed ID: 26763661	2016
Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate. Analytical and bioanalytical chemistry\| PubMed ID: 26804737	2016
Selective labelling and eradication of antibiotic-tolerant bacterial populations in Pseudomonas aeruginosa biofilms. Nature communications\| PubMed ID: 26892159	2016
Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues. Molecular brain\| PubMed ID: 26892330	2016
MSC secretes at least 3 EV types each with a unique permutation of membrane lipid, protein and RNA. Journal of extracellular vesicles\| PubMed ID: 26928672	2016
A high-throughput peptidomic strategy to decipher the molecular diversity of cyclic cysteine-rich peptides. Scientific reports\| PubMed ID: 26965458	2016
Data for iTRAQ profiling of micro-vesicular plasma specimens: In search of potential prognostic circulatory biomarkers for Lacunar infarction. Data in brief\| PubMed ID: 26966714	2015
Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular disease. Molecular brain\| PubMed ID: 26983404	2016
Drosophila expressing human SOD1 successfully recapitulates mitochondrial phenotypic features of familial amyotrophic lateral sclerosis. Neuroscience letters\| PubMed ID: 27163198	2016
Commercial processed soy-based food product contains glycated and glycoxidated lunasin proteoforms. Scientific reports\| PubMed ID: 27189269	2016
Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR. Molecular neurodegeneration\| PubMed ID: 27216497	2016
Plasma-derived Extracellular Vesicles Contain Predictive Biomarkers and Potential Therapeutic Targets for Myocardial Ischemic (MI) Injury. Molecular & cellular proteomics : MCP\| PubMed ID: 27234505	2016
Global re-wiring of p53 transcription regulation by the hepatitis B virus X protein. Molecular oncology\| PubMed ID: 27302019	2016
Proteomics study revealed altered proteome of Dichogaster curgensis upon exposure to fly ash. Chemosphere\| PubMed ID: 27371791	2016
Proteome mapping of Plasmodium: identification of the P. yoelii remodellome. Scientific reports\| PubMed ID: 27503796	2016
Characterization of Glutamine Deamidation by Long-Length Electrostatic Repulsion-Hydrophilic Interaction Chromatography-Tandem Mass Spectrometry (LERLIC-MS/MS) in Shotgun Proteomics. Analytical chemistry\| PubMed ID: 27689507	2016
Irradiation of Epithelial Carcinoma Cells Upregulates Calcium-Binding Proteins That Promote Survival under Hypoxic Conditions. Journal of proteome research\| PubMed ID: 27790916	2016
Insight of brain degenerative protein modifications in the pathology of neurodegeneration and dementia by proteomic profiling. Molecular brain\| PubMed ID: 27809929	2016
Ginkgotides: Proline-Rich Hevein-Like Peptides from Gymnosperm Ginkgo biloba. Frontiers in plant science\| PubMed ID: 27857717	2016
Corrigendum: Proteome mapping of Plasmodium: identification of the P. yoelii remodellome. Scientific reports\| PubMed ID: 27869140	2016
Structural insights into the LCIB protein family reveals a new group of β-carbonic anhydrases. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 27911826	2016
Phosphatase POPX2 Exhibits Dual Regulatory Functions in Cancer Metastasis. Journal of proteome research\| PubMed ID: 27976581	2017
Dietary phytochemical PEITC restricts tumor development via modulation of epigenetic writers and erasers. Scientific reports\| PubMed ID: 28079155	2017