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1Department of Anesthesiology,David Geffen School of Medicine at UCLA, 2Department of Medicine,David Geffen School of Medicine at UCLA, 3Department of Physiology,David Geffen School of Medicine at UCLA, 4Department of Internal Medicine,Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah
Chapters
- 00:05Title
- 01:06Heart Homogenization and Nuclear Isolation
- 02:22Nucleoplasm and Detergent-extracted Chromatin Fractionation
- 03:22Acid-extraction Fractionation – DNA-bound Protein Enrichment
- 04:51Representative Chromatin Proteome Quantitation
- 07:49Conclusion
Advances in mass spectrometry have allowed the high throughput analysis of protein expression and modification in a host of tissues. Combined with subcellular fractionation and disease models, quantitative mass spectrometry and bioinformatics can reveal new properties in biological systems. The method described herein analyzes chromatin-associated proteins in the setting of heart disease and is readily applicable to other in vivo models of human disease.
Tags
Quantitative AnalysisChromatin ProteomesDiseaseNucleusGene RegulationAdult Mammalian Cardiomyocyte NucleiBinucleated CellsHeterochromatic StateDNA PackagingTranscriptional RegulationDevelopmentDiseaseNuclear ProteinsTranscriptional ProgramsHeart DiseaseMortalityNuclear ProteomeMass SpectrometryAnnotationRelative QuantificationProtein AbundanceProteomic StudiesCardiac Nuclear ProteomeNuclear Sub Compartments
