Brian Oliver Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases National Institutes of Health Biography Publications Institution JoVE Articles Brian Oliver has not added a biography. If you are Brian Oliver and would like to personalize this page please email our Author Liaison for assistance. Publications Emergent Dynamics of Adult Stem Cell Lineages from Single Nucleus and Single Cell RNA-Seq of Testes ELife. Feb, 2023 | Pubmed ID: 36795469 Whole Animal Feeding FLat (WAFFL): a Complete and Comprehensive Validation of a Novel, High-throughput Fly Experimentation System G3 (Bethesda, Md.). Mar, 2023 | Pubmed ID: 36650008 Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Genus Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jan, 2023 | Pubmed ID: 36037023 Creation of a New X Chromosome Balancer, ( ), Using the CRISPR/Cas9 Gene-editing System MicroPublication Biology. 2022 | Pubmed ID: 36439394 NetREX-CF Integrates Incomplete Transcription Factor Data with Gene Expression to Reconstruct Gene Regulatory Networks Communications Biology. Nov, 2022 | Pubmed ID: 36418514 Fly Cell Atlas: A Single-nucleus Transcriptomic Atlas of the Adult Fruit Fly Science (New York, N.Y.). Mar, 2022 | Pubmed ID: 35239393 Dynamic Sex Chromosome Expression in Drosophila Male Germ Cells Nature Communications. Feb, 2021 | Pubmed ID: 33563972 is a 5' UTR Deletion of the Essential Gene in MicroPublication Biology. May, 2020 | Pubmed ID: 32550484 Sperm Head-Tail Linkage Requires Restriction of Pericentriolar Material to the Proximal Centriole End Developmental Cell. Apr, 2020 | Pubmed ID: 32169161 Heterochromatin Stabilization Requires the Zinc-Finger Protein Small Ovary Genetics. Nov, 2019 | Pubmed ID: 31558581 Author Correction: Reprogramming of Regulatory Network Using Expression Uncovers Sex-specific Gene Regulation in Drosophila Nature Communications. Jul, 2019 | Pubmed ID: 31358758 Correction To: DNA Copy Number Evolution in Drosophila Cell Lines Genome Biology. Mar, 2019 | Pubmed ID: 30857560 Drosophila Balancer Reengineering Using Polycistronic GRNA for CRISPR/Cas9 Gene Editing MicroPublication Biology. Nov, 2018 | Pubmed ID: 32550371 Re-annotation of Eight Genomes Life Science Alliance. Dec, 2018 | Pubmed ID: 30599046 Non-canonical Drosophila X Chromosome Dosage Compensation and Repressive Topologically Associated Domains Epigenetics & Chromatin. Oct, 2018 | Pubmed ID: 30355339 Reprogramming of Regulatory Network Using Expression Uncovers Sex-specific Gene Regulation in Drosophila Nature Communications. Oct, 2018 | Pubmed ID: 30283019 Dosage-Dependent Expression Variation Suppressed on the Male Chromosome G3 (Bethesda, Md.). Feb, 2018 | Pubmed ID: 29242386 Exploring Effects of Sex and Diet on Head Gene Expression Journal of Genomics. 2017 | Pubmed ID: 29109800 Drosophila Melanogaster Positive Transcriptional Elongation Factors Regulate Metabolic and Sex-biased Expression in Adults BMC Genomics. May, 2017 | Pubmed ID: 28521739 Expressed Structurally Stable Inverted Duplicates in Mammalian Genomes As Functional Noncoding Elements Genome Biology and Evolution. Apr, 2017 | Pubmed ID: 28338961 Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody Precursors Cell Reports. Nov, 2016 | Pubmed ID: 27806295 Microenvironmental Gene Expression Plasticity Among Individual Drosophila Melanogaster G3 (Bethesda, Md.). Dec, 2016 | Pubmed ID: 27770026 Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila Melanogaster PLoS Genetics. Sep, 2016 | Pubmed ID: 27599372 External RNA Controls Consortium Beta Version Update Journal of Genomics. 2016 | Pubmed ID: 27512518 A Class of Diacylglycerol Acyltransferase 1 Inhibitors Identified by a Combination of Phenotypic High-throughput Screening, Genomics, and Genetics EBioMedicine. Jun, 2016 | Pubmed ID: 27428418 Developmental Biology: Females Have a Lot of Guts Nature. Feb, 2016 | Pubmed ID: 26887491 Sxl-Dependent, Tra/tra2-Independent Alternative Splicing of the Drosophila Melanogaster X-Linked Gene Found in Neurons G3 (Bethesda, Md.). Oct, 2015 | Pubmed ID: 26511498 X Chromosome and Autosome Dosage Responses in Drosophila Melanogaster Heads G3 (Bethesda, Md.). Apr, 2015 | Pubmed ID: 25850426 DNA Copy Number Evolution in Drosophila Cell Lines Genome Biology. Aug, 2014 | Pubmed ID: 25262759 Comparative Analysis of the Transcriptome Across Distant Species Nature. Aug, 2014 | Pubmed ID: 25164755 Flipping the Doublesex Switch with a PiRNA Genome Biology. Jun, 2014 | Pubmed ID: 25002081 Comparative Validation of the D. Melanogaster ModENCODE Transcriptome Annotation Genome Research. Jul, 2014 | Pubmed ID: 24985915 Transcriptional Effects of Gene Dose Reduction Biology of Sex Differences. Mar, 2014 | Pubmed ID: 24581086 Design of RNA Splicing Analysis Null Models for Post Hoc Filtering of Drosophila Head RNA-Seq Data with the Splicing Analysis Kit (Spanki) BMC Bioinformatics. Nov, 2013 | Pubmed ID: 24209455 Simplification and Desexualization of Gene Expression in Self-fertile Nematodes Current Biology : CB. Nov, 2012 | Pubmed ID: 23103191 Genomics of Sex Determination in Drosophila Briefings in Functional Genomics. Sep, 2012 | Pubmed ID: 23023665 Mediation of Drosophila Autosomal Dosage Effects and Compensation by Network Interactions Genome Biology. Apr, 2012 | Pubmed ID: 22531030 Evidence for Compensatory Upregulation of Expressed X-linked Genes in Mammals, Caenorhabditis Elegans and Drosophila Melanogaster Nature Genetics. Oct, 2011 | Pubmed ID: 22019781 Synthetic Spike-in Standards for RNA-seq Experiments Genome Research. Sep, 2011 | Pubmed ID: 21816910 Lipid Profiles of Female and Male Drosophila BMC Research Notes. Jun, 2011 | Pubmed ID: 21676256 Microarrays, Deep Sequencing and the True Measure of the Transcriptome BMC Biology. May, 2011 | Pubmed ID: 21627854 Identification of Functional Elements and Regulatory Circuits by Drosophila ModENCODE Science (New York, N.Y.). Dec, 2010 | Pubmed ID: 21177974 Transcriptional Regulation by CHIP/LDB Complexes PLoS Genetics. Aug, 2010 | Pubmed ID: 20730086 Germline-dependent Gene Expression in Distant Non-gonadal Somatic Tissues of Drosophila BMC Genomics. Jun, 2010 | Pubmed ID: 20515475 Overexpression of TUF1 Restores Respiratory Growth and Fluconazole Sensitivity to a Cryptococcus Neoformans Vad1Delta Mutant Microbiology (Reading, England). Aug, 2010 | Pubmed ID: 20430817 Expression in Aneuploid Drosophila S2 Cells PLoS Biology. Feb, 2010 | Pubmed ID: 20186269 An Evolutionary Consequence of Dosage Compensation on Drosophila Melanogaster Female X-chromatin Structure? BMC Genomics. Jan, 2010 | Pubmed ID: 20051121 Drosophila Germline Sex Determination: Integration of Germline Autonomous Cues and Somatic Signals Current Topics in Developmental Biology. 2008 | Pubmed ID: 19118665 COPI Complex is a Regulator of Lipid Homeostasis PLoS Biology. Nov, 2008 | Pubmed ID: 19067489 The Sex Chromosome That Refused to Die BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology. May, 2008 | Pubmed ID: 18404685 Sex, Dose, and Equality PLoS Biology. Dec, 2007 | Pubmed ID: 18162049 Demasculinization of X Chromosomes in the Drosophila Genus Nature. Nov, 2007 | Pubmed ID: 17994090 Constraint and Turnover in Sex-biased Gene Expression in the Genus Drosophila Nature. Nov, 2007 | Pubmed ID: 17994089 Sex-specific DoublesexM Expression in Subsets of Drosophila Somatic Gonad Cells BMC Developmental Biology. Oct, 2007 | Pubmed ID: 17935627 Dosage Compensation Goes Global Current Opinion in Genetics & Development. Apr, 2007 | Pubmed ID: 17307352 Drosophila Mojoless, a Retroposed GSK-3, Has Functionally Diverged to Acquire an Essential Role in Male Fertility Molecular Biology and Evolution. Mar, 2007 | Pubmed ID: 17179138 Genetic Interactions Between Drosophila Melanogaster Menin and Jun/Fos Developmental Biology. Oct, 2006 | Pubmed ID: 16930585 Comparative Genomics of Drosophila and Human Core Promoters Genome Biology. 2006 | Pubmed ID: 16827941 One Hundred Years of High-throughput Drosophila Research Chromosome Research : an International Journal on the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 2006 | Pubmed ID: 16821132 Global Analysis of X-chromosome Dosage Compensation Journal of Biology. 2006 | Pubmed ID: 16507155 A Non-random Walk Through the Genome Genome Biology. 2005 | Pubmed ID: 15833129 X for Intersection: Retrotransposition Both on and off the X Chromosome is More Frequent Trends in Genetics : TIG. Jan, 2005 | Pubmed ID: 15680505 Core Promoter Sequences Contribute to Ovo-B Regulation in the Drosophila Melanogaster Germline Genetics. Jan, 2005 | Pubmed ID: 15371353 A Survey of Ovary-, Testis-, and Soma-biased Gene Expression in Drosophila Melanogaster Adults Genome Biology. 2004 | Pubmed ID: 15186491 Molecular Pathology of the MEN1 Gene Annals of the New York Academy of Sciences. Apr, 2004 | Pubmed ID: 15153434 Battle of the Xs BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology. May, 2004 | Pubmed ID: 15112234 FlyGEM, a Full Transcriptome Array Platform for the Drosophila Community Genome Biology. 2004 | Pubmed ID: 15003122 Drosophila Microarray Platforms Briefings in Functional Genomics & Proteomics. Jul, 2003 | Pubmed ID: 15239930 How Many Genes in a Genome? Genome Biology. 2003 | Pubmed ID: 14709168 Paucity of Genes on the Drosophila X Chromosome Showing Male-biased Expression Science (New York, N.Y.). Jan, 2003 | Pubmed ID: 12511656 Genetic Control of Germline Sexual Dimorphism in Drosophila International Review of Cytology. 2002 | Pubmed ID: 12211627 Drosophila Melanogaster, Two Years into the Post-genomic Era Genome Biology. Jun, 2002 | Pubmed ID: 12184804 Gene Expression Neighborhoods Journal of Biology. 2002 | Pubmed ID: 12144705 Fly Factory Genome Research. Jul, 2002 | Pubmed ID: 12097337 Functional Conservation for Lipid Storage Droplet Association Among Perilipin, ADRP, and TIP47 (PAT)-related Proteins in Mammals, Drosophila, and Dictyostelium The Journal of Biological Chemistry. Aug, 2002 | Pubmed ID: 12077142 Sex Determination Signals Control Ovo-B Transcription in Drosophila Melanogaster Germ Cells Genetics. Feb, 2002 | Pubmed ID: 11861560 Gene Discovery Using Computational and Microarray Analysis of Transcription in the Drosophila Melanogaster Testis Genome Research. Dec, 2000 | Pubmed ID: 11116097 Vurdering av kjemisk toksisitet hos voksne Drosophila melanogaster Jessica M. Holsopple*1,2, Shannon R. Smoot*1, Ellen M. Popodi1,2, John K. Colbourne3, Joseph R. Shaw4, Brian Oliver5, Thomas C. Kaufman1, Jason M. Tennessen1 1Department of Biology, Indiana University, 2Bloomington Drosophila Stock Center, Department of Biology, Indiana University, 3School of Biosciences, University of Birmingham, 4O'Neill School of Public and Environmental Affairs, Indiana University, 5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health JoVE 65029 Biology
Vurdering av kjemisk toksisitet hos voksne Drosophila melanogaster Jessica M. Holsopple*1,2, Shannon R. Smoot*1, Ellen M. Popodi1,2, John K. Colbourne3, Joseph R. Shaw4, Brian Oliver5, Thomas C. Kaufman1, Jason M. Tennessen1 1Department of Biology, Indiana University, 2Bloomington Drosophila Stock Center, Department of Biology, Indiana University, 3School of Biosciences, University of Birmingham, 4O'Neill School of Public and Environmental Affairs, Indiana University, 5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health JoVE 65029 Biology