Kristina Gruden Department of Biotechnology and Systems Biology National Institute of Biology Biography Publications Institution JoVE Articles Kristina Gruden has not added a biography. If you are Kristina Gruden and would like to personalize this page please email our Author Liaison for assistance. Publications Protein Complexes from Edible Mushrooms As a Sustainable Potato Protection Against Coleopteran Pests Plant Biotechnology Journal. May, 2024 | Pubmed ID: 38733093 Stress Knowledge Map: A Knowledge Graph Resource for Systems Biology Analysis of Plant Stress Responses Plant Communications. Apr, 2024 | Pubmed ID: 38616489 Transcriptome-informed Identification and Characterization of - and -isoprenyl Diphosphate Synthase Genes IScience. Apr, 2024 | Pubmed ID: 38523795 Cell-type Proteomic and Metabolomic Resolution of Early and Late Grain Filling Stages of Wheat Endosperm Plant Biotechnology Journal. Mar, 2024 | Pubmed ID: 38050335 Transcriptional and Epigenetic Changes During Tomato Yellow Leaf Curl Virus Infection in Tomato BMC Plant Biology. Dec, 2023 | Pubmed ID: 38110861 Candidate Pathogenicity Factor/effector Proteins of ' Phytoplasma Solani' Modulate Plant Carbohydrate Metabolism, Accelerate the Ascorbate-glutathione Cycle, and Induce Autophagosomes Frontiers in Plant Science. 2023 | Pubmed ID: 37662165 A Mini-TGA Protein Modulates Gene Expression Through Heterogeneous Association with Transcription Factors Plant Physiology. Mar, 2023 | Pubmed ID: 36517238 Chloroplast Redox State Changes Mark Cell-to-cell Signaling in the Hypersensitive Response The New Phytologist. Jan, 2023 | Pubmed ID: 35946378 Systems Biology in ELIXIR: Modelling in the Spotlight F1000Research. 2022 | Pubmed ID: 36742342 Transcriptional Deregulation of Stress-growth Balance in Biofactories Producing Insect Sex Pheromones Frontiers in Plant Science. 2022 | Pubmed ID: 36388501 PISA-tree - a Data Management Framework for Life Science Research Projects Using a Standardised Directory Tree Scientific Data. Nov, 2022 | Pubmed ID: 36357404 Corrigendum: Physiological and Transcriptional Responses to Saline Irrigation of Young 'Tempranillo' Vines Grafted Onto Different Rootstocks Frontiers in Plant Science. 2022 | Pubmed ID: 36226277 Organelles and Phytohormones: a Network of Interactions in Plant Stress Responses Journal of Experimental Botany. Nov, 2022 | Pubmed ID: 36169618 Toward Learning the Principles of Plant Gene Regulation Trends in Plant Science. Dec, 2022 | Pubmed ID: 36100536 CRISPR/Cas9-mediated Fine-tuning of MiRNA Expression in Tetraploid Potato Horticulture Research. 2022 | Pubmed ID: 36072839 TGA Transcription Factors-Structural Characteristics As Basis for Functional Variability Frontiers in Plant Science. 2022 | Pubmed ID: 35958211 Physiological and Transcriptional Responses to Saline Irrigation of Young 'Tempranillo' Vines Grafted Onto Different Rootstocks Frontiers in Plant Science. 2022 | Pubmed ID: 35734259 PaintOmics 4: New Tools for the Integrative Analysis of Multi-omics Datasets Supported by Multiple Pathway Databases Nucleic Acids Research. Jul, 2022 | Pubmed ID: 35609982 Analysis of Virus Spread Around the Cell Death Zone at Spatiotemporal Resolution Using Confocal Microscopy Methods in Molecular Biology (Clifton, N.J.). 2022 | Pubmed ID: 35583788 Fermentative Indole Production Via Bacterial Tryptophan Synthase Alpha Subunit and Plant Indole-3-Glycerol Phosphate Lyase Enzymes Journal of Agricultural and Food Chemistry. May, 2022 | Pubmed ID: 35500281 Plant X-tender Toolbox for the Assembly and Expression of Multiple Transcriptional Units in Plants Methods in Molecular Biology (Clifton, N.J.). 2022 | Pubmed ID: 35188657 Direct Regulation of Shikimate, Early Phenylpropanoid, and Stilbenoid Pathways by Subgroup 2 R2R3-MYBs in Grapevine The Plant Journal : for Cell and Molecular Biology. Apr, 2022 | Pubmed ID: 35092714 Insect Pest Management in the Age of Synthetic Biology Plant Biotechnology Journal. Jan, 2022 | Pubmed ID: 34416790 Methodologies for Discovery and Quantitative Profiling of SRNAs in Potato Methods in Molecular Biology (Clifton, N.J.). 2021 | Pubmed ID: 34448163 Prunus Persica Plant Endogenous Peptides PpPep1 and PpPep2 Cause PTI-like Transcriptome Reprogramming in Peach and Enhance Resistance to Xanthomonas Arboricola Pv. Pruni BMC Genomics. May, 2021 | Pubmed ID: 34006221 Differential Response of Grapevine to Infection with ' Phytoplasma Solani' in Early and Late Growing Season Through Complex Regulation of MRNA and Small RNA Transcriptomes International Journal of Molecular Sciences. Mar, 2021 | Pubmed ID: 33805429 New Cross-Talks Between Pathways Involved in Grapevine Infection with ' Phytoplasma Solani' Revealed by Temporal Network Modelling Plants (Basel, Switzerland). Mar, 2021 | Pubmed ID: 33805409 Biosensors: A Sneak Peek into Plant Cell's Immunity Life (Basel, Switzerland). Mar, 2021 | Pubmed ID: 33800034 Incorporating RNA-Seq Transcriptomics into Glycosylation-integrating Metabolic Network Modelling Kinetics: Multiomic Chinese Hamster Ovary (CHO) Cell Bioreactors Biotechnology and Bioengineering. Apr, 2021 | Pubmed ID: 33399226 Generation and Functional Analysis of Potato Virus Y Mutants Bio-protocol. Jul, 2020 | Pubmed ID: 33659360 The Need for Standardisation in Life Science Research - an Approach to Excellence and Trust F1000Research. 2020 | Pubmed ID: 33604028 Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat Frontiers in Plant Science. 2020 | Pubmed ID: 33519854 Validating the Potential of Double-Stranded RNA Targeting Colorado Potato Beetle Gene in Laboratory and Field Trials Frontiers in Plant Science. 2020 | Pubmed ID: 32973826 Editorial Overview: Resistance is Not Futile: an Update on Antiviral Strategies in Plants Current Opinion in Virology. Jun, 2020 | Pubmed ID: 32928495 Ménage à Trois: Unraveling the Mechanisms Regulating Plant-Microbe-Arthropod Interactions Trends in Plant Science. Dec, 2020 | Pubmed ID: 32828689 Precision Transcriptomics of Viral Foci Reveals the Spatial Regulation of Immune-signaling Genes and Identifies RBOHD As an Important Player in the Incompatible Interaction Between Potato Virus Y and Potato The Plant Journal : for Cell and Molecular Biology. Nov, 2020 | Pubmed ID: 32772469 Cultivar-specific Transcriptome and Pan-transcriptome Reconstruction of Tetraploid Potato Scientific Data. Jul, 2020 | Pubmed ID: 32709858 Roles of Small RNAs in the Establishment of Tolerant Interaction Between Plants and Viruses Current Opinion in Virology. Jun, 2020 | Pubmed ID: 32480352 Enabling Reusability of Plant Phenomic Datasets with MIAPPE 1.1 The New Phytologist. Jul, 2020 | Pubmed ID: 32171029 Plant Molecular Responses to Potato Virus Y: A Continuum of Outcomes from Sensitivity and Tolerance to Resistance Viruses. Feb, 2020 | Pubmed ID: 32075268 Potato Virus Y Infection Alters Small RNA Metabolism and Immune Response in Tomato Viruses. Nov, 2019 | Pubmed ID: 31783643 Multiomics Analysis of Tolerant Interaction of Potato with Potato Virus Y Scientific Data. Oct, 2019 | Pubmed ID: 31673114 Structural Basis for the Multitasking Nature of the Potato Virus Y Coat Protein Science Advances. 07, 2019 | Pubmed ID: 31328164 Interactive Exploration of Heterogeneous Biological Networks with Biomine Explorer Bioinformatics (Oxford, England). Dec, 2019 | Pubmed ID: 31233141 MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis Molecular Plant. Jun, 2019 | Pubmed ID: 30639314 DiNAR: Revealing Hidden Patterns of Plant Signalling Dynamics Using Differential Network Analysis in R Plant Methods. 2018 | Pubmed ID: 30186360 Network Modeling Unravels Mechanisms of Crosstalk Between Ethylene and Salicylate Signaling in Potato Plant Physiology. Sep, 2018 | Pubmed ID: 29934298 Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato Frontiers in Plant Science. 2018 | Pubmed ID: 29497431 A Model Species for Agricultural Pest Genomics: the Genome of the Colorado Potato Beetle, Leptinotarsa Decemlineata (Coleoptera: Chrysomelidae) Scientific Reports. 01, 2018 | Pubmed ID: 29386578 Plant X-tender: An Extension of the AssemblX System for the Assembly and Expression of Multigene Constructs in Plants PloS One. 2018 | Pubmed ID: 29300787 Salicylic Acid Perturbs SRNA-Gibberellin Regulatory Network in Immune Response of Potato to Infection Frontiers in Plant Science. 2017 | Pubmed ID: 29312421 Comparison Between Proteome and Transcriptome Response in Potato (Solanum Tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection Proteomes. Jul, 2017 | Pubmed ID: 28684682 QuantGenius: Implementation of a Decision Support System for QPCR-based Gene Quantification BMC Bioinformatics. May, 2017 | Pubmed ID: 28545393 Erratum To: Bimodal Dynamics of Primary Metabolism-related Responses in Tolerant Potato-Potato Virus Y Interaction BMC Genomics. Mar, 2017 | Pubmed ID: 28288559 GenoCAD Plant Grammar to Design Plant Expression Vectors for Promoter Analysis Methods in Molecular Biology (Clifton, N.J.). 2016 | Pubmed ID: 27557770 Integrated Omics Approaches Provide Strategies for Rapid Erythromycin Yield Increase in Saccharopolyspora Erythraea Microbial Cell Factories. Jun, 2016 | Pubmed ID: 27255285 Metabolic Consequences of Infection of Grapevine (Vitis Vinifera L.) Cv. "Modra Frankinja" with Flavescence Dorée Phytoplasma Frontiers in Plant Science. 2016 | Pubmed ID: 27242887 Solanum Venturii, a Suitable Model System for Virus-induced Gene Silencing Studies in Potato Reveals StMKK6 As an Important Player in Plant Immunity Plant Methods. 2016 | Pubmed ID: 27213007 System Level Analysis of Cacao Seed Ripening Reveals a Sequential Interplay of Primary and Secondary Metabolism Leading to Polyphenol Accumulation and Preparation of Stress Resistance The Plant Journal : for Cell and Molecular Biology. Aug, 2016 | Pubmed ID: 27136060 RNA-dependent RNA Polymerase 1 in Potato (Solanum Tuberosum) and Its Relationship to Other Plant RNA-dependent RNA Polymerases Scientific Reports. Mar, 2016 | Pubmed ID: 26979928 Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato As a Response to Potato Virus Y Infection PloS One. 2016 | Pubmed ID: 26727123 Heterogeneous Glioblastoma Cell Cross-talk Promotes Phenotype Alterations and Enhanced Drug Resistance Oncotarget. Dec, 2015 | Pubmed ID: 26517510 Transcriptome Study and Identification of Potential Marker Genes Related to the Stable Expression of Recombinant Proteins in CHO Clones BMC Biotechnology. Oct, 2015 | Pubmed ID: 26499110 Roles of the Crotonyl-CoA Carboxylase/reductase Homologues in Acetate Assimilation and Biosynthesis of Immunosuppressant FK506 in Streptomyces Tsukubaensis Microbial Cell Factories. Oct, 2015 | Pubmed ID: 26466669 Bimodal Dynamics of Primary Metabolism-related Responses in Tolerant Potato-Potato Virus Y Interaction BMC Genomics. Sep, 2015 | Pubmed ID: 26386579 Rule-Based Design of Plant Expression Vectors Using GenoCAD PloS One. 2015 | Pubmed ID: 26148190 Clitocypin, a Fungal Cysteine Protease Inhibitor, Exerts Its Insecticidal Effect on Colorado Potato Beetle Larvae by Inhibiting Their Digestive Cysteine Proteases Pesticide Biochemistry and Physiology. Jul, 2015 | Pubmed ID: 26071808 BioMiner: Paving the Way for Personalized Medicine Cancer Informatics. 2015 | Pubmed ID: 26005322 Analysis of Glioblastoma Patients' Plasma Revealed the Presence of MicroRNAs with a Prognostic Impact on Survival and Those of Viral Origin PloS One. 2015 | Pubmed ID: 25950799 Sequencing Platform Modeling and Analysis Cancer Informatics. 2015 | Pubmed ID: 25780336 Fluorescently Tagged Potato Virus Y: A Versatile Tool for Functional Analysis of Plant-Virus Interactions Molecular Plant-microbe Interactions : MPMI. Jul, 2015 | Pubmed ID: 25761209 Expression Analysis of All Protease Genes Reveals Cathepsin K to Be Overexpressed in Glioblastoma PloS One. 2014 | Pubmed ID: 25356585 Potato Virus Y Infection Hinders Potato Defence Response and Renders Plants More Vulnerable to Colorado Potato Beetle Attack Molecular Ecology. Nov, 2014 | Pubmed ID: 25251011 GMO Quantification: Valuable Experience and Insights for the Future Analytical and Bioanalytical Chemistry. Oct, 2014 | Pubmed ID: 25182968 Identification of Plasma Biomarker Candidates in Glioblastoma Using an Antibody-array-based Proteomic Approach Radiology and Oncology. Sep, 2014 | Pubmed ID: 25177240 Optimising Droplet Digital PCR Analysis Approaches for Detection and Quantification of Bacteria: a Case Study of Fire Blight and Potato Brown Rot Analytical and Bioanalytical Chemistry. Oct, 2014 | Pubmed ID: 25173868 Involvement of Potato (Solanum Tuberosum L.) MKK6 in Response to Potato Virus Y PloS One. 2014 | Pubmed ID: 25111695 GMOseek: a User Friendly Tool for Optimized GMO Testing BMC Bioinformatics. Aug, 2014 | Pubmed ID: 25084968 Plant Defence Model Revisions Through Iterative Minimisation of Constraint Violations International Journal of Computational Biology and Drug Design. 2014 | Pubmed ID: 24429503 GoMapMan: Integration, Consolidation and Visualization of Plant Gene Annotations Within the MapMan Ontology Nucleic Acids Research. Jan, 2014 | Pubmed ID: 24194592 Insertion of a Specific Fungal 3'-phosphoadenosine-5'-phosphatase Motif into a Plant Homologue Improves Halotolerance and Drought Tolerance of Plants PloS One. 2013 | Pubmed ID: 24349144 SACE_5599, a Putative Regulatory Protein, is Involved in Morphological Differentiation and Erythromycin Production in Saccharopolyspora Erythraea Microbial Cell Factories. Dec, 2013 | Pubmed ID: 24341557 Inhibition of the Growth of Colorado Potato Beetle Larvae by Macrocypins, Protease Inhibitors from the Parasol Mushroom Journal of Agricultural and Food Chemistry. Dec, 2013 | Pubmed ID: 24295324 β-1,3-glucanase Class III Promotes Spread of PVY and Improves Protein Production Plant Biotechnology Reports. 2013 | Pubmed ID: 24273610 Quantitative Analysis of Food and Feed Samples with Droplet Digital PCR PloS One. 2013 | Pubmed ID: 23658750 Real-time PCR for Specific Detection of Three Phytoplasmas from the Apple Proliferation Group Methods in Molecular Biology (Clifton, N.J.). 2013 | Pubmed ID: 22987423 Signalling Network Construction for Modelling Plant Defence Response PloS One. 2012 | Pubmed ID: 23272172 Human Mesenchymal Stem Cells Exploit the Immune Response Mediating Chemokines to Impact the Phenotype of Glioblastoma Cell Transplantation. 2012 | Pubmed ID: 22554389 A Complex of Genes Involved in Adaptation of Leptinotarsa Decemlineata Larvae to Induced Potato Defense Archives of Insect Biochemistry and Physiology. Mar, 2012 | Pubmed ID: 22392802 Comparison and Transfer Testing of Multiplex Ligation Detection Methods for GM Plants BMC Biotechnology. Jan, 2012 | Pubmed ID: 22257760 A "crossomics" Study Analysing Variability of Different Components in Peripheral Blood of Healthy Caucasoid Individuals PloS One. 2012 | Pubmed ID: 22253695 Dynamics of Responses in Compatible Potato-Potato Virus Y Interaction Are Modulated by Salicylic Acid PloS One. 2011 | Pubmed ID: 22194976 A One-step Reverse Transcription Real-time PCR Assay for the Detection and Quantitation of Grapevine Fanleaf Virus Journal of Virological Methods. Dec, 2010 | Pubmed ID: 20804787 A Panel of Real-time PCR Assays for Specific Detection of Three Phytoplasmas from the Apple Proliferation Group Molecular and Cellular Probes. Oct, 2010 | Pubmed ID: 20600822 Revealing Fosfomycin Primary Effect on Staphylococcus Aureus Transcriptome: Modulation of Cell Envelope Biosynthesis and Phosphoenolpyruvate Induced Starvation BMC Microbiology. Jun, 2010 | Pubmed ID: 20515462 Gene Expression Data Analysis Using Closed Item Set Mining for Labeled Data Omics : a Journal of Integrative Biology. Apr, 2010 | Pubmed ID: 20210654 Comparison of Nine Different Real-time PCR Chemistries for Qualitative and Quantitative Applications in GMO Detection Analytical and Bioanalytical Chemistry. Mar, 2010 | Pubmed ID: 20087729 NAIMA As a Solution for Future GMO Diagnostics Challenges Analytical and Bioanalytical Chemistry. Mar, 2010 | Pubmed ID: 19821160 'Bois Noir' Phytoplasma Induces Significant Reprogramming of the Leaf Transcriptome in the Field Grown Grapevine BMC Genomics. Oct, 2009 | Pubmed ID: 19799775 Gene Expression Profiling in Susceptible Interaction of Grapevine with Its Fungal Pathogen Eutypa Lata: Extending MapMan Ontology for Grapevine BMC Plant Biology. Aug, 2009 | Pubmed ID: 19656401 Real-time Quantitative PCR Based Sensitive Detection and Genotype Discrimination of Pepino Mosaic Virus Journal of Virological Methods. Dec, 2009 | Pubmed ID: 19643139 PVY(NTN) Elicits a Diverse Gene Expression Response in Different Potato Genotypes in the First 12 H After Inoculation Molecular Plant Pathology. Mar, 2009 | Pubmed ID: 19236574 Finding Differentially Expressed Genes in Two-channel DNA Microarray Datasets: How to Increase Reliability of Data Preprocessing Omics : a Journal of Integrative Biology. Sep, 2008 | Pubmed ID: 18771401 NAIMA: Target Amplification Strategy Allowing Quantitative On-chip Detection of GMOs Nucleic Acids Research. Oct, 2008 | Pubmed ID: 18710880 Sensitive Detection of Multiple Rotavirus Genotypes with a Single Reverse Transcription-real-time Quantitative PCR Assay Journal of Clinical Microbiology. Aug, 2008 | Pubmed ID: 18524966 Expression Microarrays in Plant-virus Interaction Methods in Molecular Biology (Clifton, N.J.). 2008 | Pubmed ID: 18370283 Detection of Nonauthorized Genetically Modified Organisms Using Differential Quantitative Polymerase Chain Reaction: Application to 35S in Maize Analytical Biochemistry. May, 2008 | Pubmed ID: 18346452 Comparison of Different Real-time PCR Chemistries and Their Suitability for Detection and Quantification of Genetically Modified Organisms BMC Biotechnology. Mar, 2008 | Pubmed ID: 18325084 Adaptation of the MapMan Ontology to Biotic Stress Responses: Application in Solanaceous Species Plant Methods. Sep, 2007 | Pubmed ID: 17784939 Calculation of Measurement Uncertainty in Quantitative Analysis of Genetically Modified Organisms Using Intermediate Precision--a Practical Approach Journal of AOAC International. 2007 | Pubmed ID: 17474528 Critical Points of DNA Quantification by Real-time PCR--effects of DNA Extraction Method and Sample Matrix on Quantification of Genetically Modified Organisms BMC Biotechnology. Aug, 2006 | Pubmed ID: 16907967 Real-time Polymerase Chain Reaction Detection of Cauliflower Mosaic Virus to Complement the 35S Screening Assay for Genetically Modified Organisms Journal of AOAC International. 2005 | Pubmed ID: 16001857 Molecular Basis of Colorado Potato Beetle Adaptation to Potato Plant Defence at the Level of Digestive Cysteine Proteinases Insect Biochemistry and Molecular Biology. Apr, 2004 | Pubmed ID: 15041020 High Throughput Image-Based Phenotyping for Determining Morphological and Physiological Responses to Single and Combined Stresses in Potato Lamis Osama Anwar Abdelhakim1, Barbora Pleskačová1, Natalia Yaneth Rodriguez-Granados2, Rashmi Sasidharan2, Lucia Sandra Perez-Borroto3, Sophia Sonnewald4, Kristina Gruden5, Ute C. Vothknecht6, Markus Teige7, Klára Panzarová1 1PSI (Photon Systems Instruments), spol. s r.o. Drasov, 2Plant Stress Resilience, Institute of Environmental Biology, Utrecht University, 3Plant Breeding, Wageningen University and Research, 4Department of Biology, Biochemistry, Friedrich-Alexander Universität Erlangen-Nürnberg, 5Department of Biotechnology and Systems Biology, National Institute of Biology, 6Plant Cell Biology, Institute of Cellular and Molecular Botany, University of Bonn, 7Department of Functional & Evolutionary Ecology, University of Vienna JoVE 66255 Biology A Streamlined Approach to Studying Cell Death Initiation in Hypersensitive Response (Video) | JoVE Tina Arnšek*1, Nuša Golob*1, Nastja Marondini1, Maruša Pompe-Novak1,2, Kristina Gruden1, Tjaša Lukan1 1National Institute of Biology, 2University of Nova Gorica JoVE 65824 Biology
High Throughput Image-Based Phenotyping for Determining Morphological and Physiological Responses to Single and Combined Stresses in Potato Lamis Osama Anwar Abdelhakim1, Barbora Pleskačová1, Natalia Yaneth Rodriguez-Granados2, Rashmi Sasidharan2, Lucia Sandra Perez-Borroto3, Sophia Sonnewald4, Kristina Gruden5, Ute C. Vothknecht6, Markus Teige7, Klára Panzarová1 1PSI (Photon Systems Instruments), spol. s r.o. Drasov, 2Plant Stress Resilience, Institute of Environmental Biology, Utrecht University, 3Plant Breeding, Wageningen University and Research, 4Department of Biology, Biochemistry, Friedrich-Alexander Universität Erlangen-Nürnberg, 5Department of Biotechnology and Systems Biology, National Institute of Biology, 6Plant Cell Biology, Institute of Cellular and Molecular Botany, University of Bonn, 7Department of Functional & Evolutionary Ecology, University of Vienna JoVE 66255 Biology
A Streamlined Approach to Studying Cell Death Initiation in Hypersensitive Response (Video) | JoVE Tina Arnšek*1, Nuša Golob*1, Nastja Marondini1, Maruša Pompe-Novak1,2, Kristina Gruden1, Tjaša Lukan1 1National Institute of Biology, 2University of Nova Gorica JoVE 65824 Biology
