Ljiljana Paša-Tolić Environmental Molecular Sciences Laboratory Pacific Northwest National Laboratory Biography Publications Institution JoVE Articles Ljiljana Paša-Tolić has not added a biography. If you are Ljiljana Paša-Tolić and would like to personalize this page please email our Author Liaison for assistance. Publications Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time As a Function of Secretome Composition Frontiers in Microbiology. 2021 | Pubmed ID: 33643238 Metabolic Interactions Between and Pseudomonas Fluorescens Under Controlled Iron-Limited Conditions MSystems. Jan, 2021 | Pubmed ID: 33402348 Proteome Specialization of Anaerobic Fungi During Ruminal Degradation of Recalcitrant Plant Fiber The ISME Journal. Feb, 2021 | Pubmed ID: 32929206 Mapping Influenza-Induced Posttranslational Modifications on Histones from CD8+ T Cells Viruses. 12, 2020 | Pubmed ID: 33302437 Dynamic Metabolic Reprogramming in Dendritic Cells: An Early Response to Influenza Infection That is Essential for Effector Function PLoS Pathogens. 10, 2020 | Pubmed ID: 33104753 Storage Conditions of Human Kidney Tissue Sections Affect Spatial Lipidomics Analysis Reproducibility Journal of the American Society for Mass Spectrometry. Dec, 2020 | Pubmed ID: 32897710 Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry Journal of the American Society for Mass Spectrometry. Sep, 2020 | Pubmed ID: 32812765 Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics Analytical Chemistry. 08, 2020 | Pubmed ID: 32639140 Metabolomic Profiling of Wild-type and Mutant Soybean Root Nodules Using Laser-ablation Electrospray Ionization Mass Spectrometry Reveals Altered Metabolism The Plant Journal : for Cell and Molecular Biology. 08, 2020 | Pubmed ID: 32410239 Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform Analytical Chemistry. 05, 2020 | Pubmed ID: 32374172 Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations Analytical Chemistry. 05, 2020 | Pubmed ID: 32314907 An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics Molecular & Cellular Proteomics : MCP. 05, 2020 | Pubmed ID: 32127492 Response Surface Methodology As a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging Journal of the American Society for Mass Spectrometry. Mar, 2020 | Pubmed ID: 32126772 Top-down Mass Spectrometry of Histone Modifications in Sorghum Reveals Potential Epigenetic Markers for Drought Acclimation Methods (San Diego, Calif.). 12, 2020 | Pubmed ID: 31655121 In-Situ Metabolomic Analysis of Roots Colonized by Beneficial Endophytic Bacteria Molecular Plant-microbe Interactions : MPMI. Feb, 2020 | Pubmed ID: 31544655 High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform Analytical Chemistry. 10, 2019 | Pubmed ID: 31509397 A Five-level Classification System for Proteoform Identifications Nature Methods. 10, 2019 | Pubmed ID: 31451767 Best Practices and Benchmarks for Intact Protein Analysis for Top-down Mass Spectrometry Nature Methods. 07, 2019 | Pubmed ID: 31249407 Online Supercritical Fluid Extraction Mass Spectrometry (SFE-LC-FTMS) for Sensitive Characterization of Soil Organic Matter Faraday Discussions. 08, 2019 | Pubmed ID: 31155623 Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry Analytical Chemistry. 04, 2019 | Pubmed ID: 30821434 Atmo-ecometabolomics: a Novel Atmospheric Particle Chemical Characterization Methodology for Ecological Research Environmental Monitoring and Assessment. Jan, 2019 | Pubmed ID: 30649631 Siderophore Profiling of Co-habitating Soil Bacteria by Ultra-high Resolution Mass Spectrometry Metallomics : Integrated Biometal Science. 01, 2019 | Pubmed ID: 30427023 We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of International Journal of Molecular Sciences. Dec, 2018 | Pubmed ID: 30586850 Metabolic Noise and Distinct Subpopulations Observed by Single Cell LAESI Mass Spectrometry of Plant Cells Frontiers in Plant Science. 2018 | Pubmed ID: 30498504 Increasing the Separation Capacity of Intact Histone Proteoforms Chromatography Coupling Online Weak Cation Exchange-HILIC to Reversed Phase LC UVPD-HRMS Journal of Proteome Research. 11, 2018 | Pubmed ID: 30226781 Observed Metabolic Asymmetry Within Soybean Root Nodules Reflects Unexpected Complexity in Rhizobacteria-legume Metabolite Exchange The ISME Journal. 09, 2018 | Pubmed ID: 29899508 Author Correction: Informed-Proteomics: Open-source Software Package for Top-down Proteomics Nature Methods. Jul, 2018 | Pubmed ID: 29899368 Toward Individual Glomerular Phenotyping: Advent of Precision Medicine in Kidney Biopsies Kidney International. 06, 2018 | Pubmed ID: 29792268 Moving Beyond the Van Krevelen Diagram: A New Stoichiometric Approach for Compound Classification in Organisms Analytical Chemistry. 05, 2018 | Pubmed ID: 29671593 High Speed Intact Protein Characterization Using 4X Frequency Multiplication, Ion Trap Harmonization, and 21 Tesla FTICR-MS Analytical Chemistry. 05, 2018 | Pubmed ID: 29613776 Subnanogram Proteomics: Impact of LC Column Selection, MS Instrumentation and Data Analysis Strategy on Proteome Coverage for Trace Samples International Journal of Mass Spectrometry. Apr, 2018 | Pubmed ID: 29576737 ProForma: A Standard Proteoform Notation Journal of Proteome Research. 03, 2018 | Pubmed ID: 29397739 Surface Induced Dissociation Coupled with High Resolution Mass Spectrometry Unveils Heterogeneity of a 211 KDa Multicopper Oxidase Protein Complex Journal of the American Society for Mass Spectrometry. 04, 2018 | Pubmed ID: 29388167 Community Proteogenomics Reveals the Systemic Impact of Phosphorus Availability on Microbial Functions in Tropical Soil Nature Ecology & Evolution. 03, 2018 | Pubmed ID: 29358607 Close and Distant: Contrasting the Metabolism of Two Closely Related Subspecies of Scots Pine Under the Effects of Folivory and Summer Drought Ecology and Evolution. 11, 2017 | Pubmed ID: 29152192 Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra Analytical Chemistry. Dec, 2017 | Pubmed ID: 29120613 De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra Using Top-Down Intended Methods Proteomics. Dec, 2017 | Pubmed ID: 29110399 A Compendium of Multi-omic Sequence Information from the Saanich Inlet Water Column Scientific Data. 10, 2017 | Pubmed ID: 29087368 Biogenic Manganese Oxide Nanoparticle Formation by a Multimeric Multicopper Oxidase Mnx Nature Communications. 09, 2017 | Pubmed ID: 28963463 Informed-Proteomics: Open-source Software Package for Top-down Proteomics Nature Methods. Sep, 2017 | Pubmed ID: 28783154 Quantitative ITRAQ-based Secretome Analysis Reveals Species-specific and Temporal Shifts in Carbon Utilization Strategies Among Manganese(II)-oxidizing Ascomycete Fungi Fungal Genetics and Biology : FG & B. 09, 2017 | Pubmed ID: 28676260 Diurnal Cycling of Rhizosphere Bacterial Communities is Associated with Shifts in Carbon Metabolism Microbiome. 06, 2017 | Pubmed ID: 28646918 Targeting Metabolic Reprogramming by Influenza Infection for Therapeutic Intervention Cell Reports. 05, 2017 | Pubmed ID: 28538182 Sequential Extraction Protocol for Organic Matter from Soils and Sediments Using High Resolution Mass Spectrometry Analytica Chimica Acta. Jun, 2017 | Pubmed ID: 28495096 Quantitative Cardiac Phosphoproteomics Profiling During Ischemia-reperfusion in an Immature Swine Model American Journal of Physiology. Heart and Circulatory Physiology. Jul, 2017 | Pubmed ID: 28455290 A Mass Graph-based Approach for the Identification of Modified Proteoforms Using Top-down Tandem Mass Spectra Bioinformatics (Oxford, England). 05, 2017 | Pubmed ID: 28453668 Laser-ablation Electrospray Ionization Mass Spectrometry with Ion Mobility Separation Reveals Metabolites in the Symbiotic Interactions of Soybean Roots and Rhizobia The Plant Journal : for Cell and Molecular Biology. Jul, 2017 | Pubmed ID: 28394446 High-resolution Ultrahigh-pressure Long Column Reversed-phase Liquid Chromatography for Top-down Proteomics Journal of Chromatography. A. May, 2017 | Pubmed ID: 28077236 Profiling of Histone Post-Translational Modifications in Mouse Brain with High-Resolution Top-Down Mass Spectrometry Journal of Proteome Research. 02, 2017 | Pubmed ID: 28001079 Surface-Induced Dissociation of Protein Complexes in a Hybrid Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Analytical Chemistry. 01, 2017 | Pubmed ID: 27977147 Unambiguous Identification and Discovery of Bacterial Siderophores by Direct Injection 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Metallomics : Integrated Biometal Science. 01, 2017 | Pubmed ID: 27905613 Profiling Changes in Histone Post-translational Modifications by Top-Down Mass Spectrometry Methods in Molecular Biology (Clifton, N.J.). 2017 | Pubmed ID: 27832539 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Greatly Expands Mass Spectrometry Toolbox Journal of the American Society for Mass Spectrometry. 12, 2016 | Pubmed ID: 27734325 Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi PloS One. 2016 | Pubmed ID: 27434633 Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore Journal of Proteome Research. 08, 2016 | Pubmed ID: 27291504 Soybean Roots Grown Under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles Frontiers in Plant Science. 2016 | Pubmed ID: 27200004 Top-down Analysis of Protein Samples by De Novo Sequencing Techniques Bioinformatics (Oxford, England). 09, 2016 | Pubmed ID: 27187201 Vacuum Ultraviolet Photodissociation and Fourier Transform-Ion Cyclotron Resonance (FT-ICR) Mass Spectrometry: Revisited Analytical Chemistry. Mar, 2016 | Pubmed ID: 26882021 Utilizing a Robotic Sprayer for High Lateral and Mass Resolution MALDI FT-ICR MSI of Microbial Cultures Journal of the American Society for Mass Spectrometry. Mar, 2016 | Pubmed ID: 26729451 De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra Journal of Proteome Research. Nov, 2015 | Pubmed ID: 26412692 MALDI-Mass Spectrometric Imaging Revealing Hypoxia-Driven Lipids and Proteins in a Breast Tumor Model Analytical Chemistry. Jun, 2015 | Pubmed ID: 25993305 Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-resolution Mass Spectrometry Analytical Chemistry. 2015 | Pubmed ID: 25884232 Subunit Compositions of Arabidopsis RNA Polymerases I and III Reveal Pol I- and Pol III-specific Forms of the AC40 Subunit and Alternative Forms of the C53 Subunit Nucleic Acids Research. Apr, 2015 | Pubmed ID: 25813043 Quantitative Proteomic Profiling of Low-Dose Ionizing Radiation Effects in a Human Skin Model Proteomes. Jul, 2014 | Pubmed ID: 28250387 Functional Diversification of Maize RNA Polymerase IV and V Subtypes Via Alternative Catalytic Subunits Cell Reports. Oct, 2014 | Pubmed ID: 25284785 Structural Analysis of N- and O-glycans Using ZIC-HILIC/dialysis Coupled to NMR Detection Fungal Genetics and Biology : FG & B. Nov, 2014 | Pubmed ID: 25117693 Application of Printed Circuit Board Technology to FT-ICR MS Analyzer Cell Construction and Prototyping Journal of the American Society for Mass Spectrometry. Dec, 2014 | Pubmed ID: 25056862 Metaproteomics Reveals Differential Modes of Metabolic Coupling Among Ubiquitous Oxygen Minimum Zone Microbes Proceedings of the National Academy of Sciences of the United States of America. Aug, 2014 | Pubmed ID: 25053816 Secondary Ion Mass Spectrometry Imaging of Dictyostelium Discoideum Aggregation Streams PloS One. 2014 | Pubmed ID: 24911189 Automated Genome Mining of Ribosomal Peptide Natural Products ACS Chemical Biology. Jul, 2014 | Pubmed ID: 24802639 Decreased Abundance of Type III Secretion System-inducing Signals in Arabidopsis Mkp1 Enhances Resistance Against Pseudomonas Syringae Proceedings of the National Academy of Sciences of the United States of America. May, 2014 | Pubmed ID: 24753604 The First Pilot Project of the Consortium for Top-down Proteomics: a Status Report Proteomics. May, 2014 | Pubmed ID: 24644084 Proteomic Profiling of Exosomes Leads to the Identification of Novel Biomarkers for Prostate Cancer PloS One. 2013 | Pubmed ID: 24391718 Identification of Ultramodified Proteins Using Top-down Tandem Mass Spectra Journal of Proteome Research. Dec, 2013 | Pubmed ID: 24188097 Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass PloS One. 2013 | Pubmed ID: 23894306 Top-down Proteomics Reveals a Unique Protein S-thiolation Switch in Salmonella Typhimurium in Response to Infection-like Conditions Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013 | Pubmed ID: 23720318 Development of an Ecophysiological Model for Diplosphaera Colotermitum TAV2, a Termite Hindgut Verrucomicrobium The ISME Journal. Sep, 2013 | Pubmed ID: 23657364 Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium Aromaticivorans International Journal of Proteomics. 2013 | Pubmed ID: 23555055 Automated Immobilized Metal Affinity Chromatography System for Enrichment of Escherichia Coli Phosphoproteome Electrophoresis. Jun, 2013 | Pubmed ID: 23494780 Unexpected Diversity of Signal Peptides in Prokaryotes MBio. Nov, 2012 | Pubmed ID: 23169999 In Vitro Transcription Activities of Pol IV, Pol V, and RDR2 Reveal Coupling of Pol IV and RDR2 for DsRNA Synthesis in Plant RNA Silencing Molecular Cell. Dec, 2012 | Pubmed ID: 23142082 Enhanced Top-down Characterization of Histone Post-translational Modifications Genome Biology. Oct, 2012 | Pubmed ID: 23034525 Antibody-free, Targeted Mass-spectrometric Approach for Quantification of Proteins at Low Picogram Per Milliliter Levels in Human Plasma/serum Proceedings of the National Academy of Sciences of the United States of America. Sep, 2012 | Pubmed ID: 22949669 Evaluation of SDS Depletion Using an Affinity Spin Column and IMS-MS Detection Proteomics. Nov, 2012 | Pubmed ID: 22936678 Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium Japonicum Molecular & Cellular Proteomics : MCP. Nov, 2012 | Pubmed ID: 22843990 Genes for the Major Structural Components of Thermotogales Species' Togas Revealed by Proteomic and Evolutionary Analyses of OmpA and OmpB Homologs PloS One. 2012 | Pubmed ID: 22768259 Angular Averaged Profiling of the Radial Electric Field in Compensated FTICR Cells Journal of the American Society for Mass Spectrometry. Jul, 2012 | Pubmed ID: 22565507 FRET Imaging of Diatoms Expressing a Biosilica-localized Ribose Sensor PloS One. 2012 | Pubmed ID: 22470473 Infección Del Virus Del Dengue Perturba La Homeostasis De Lípidos En Las Células Del Mosquito Infectado PLoS Pathogens. 2012 | Pubmed ID: 22457619 Time-course Analysis of the Shewanella Amazonensis SB2B Proteome in Response to Sodium Chloride Shock Scientific Reports. 2011 | Pubmed ID: 22355544 C60 Secondary Ion Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Analytical Chemistry. Dec, 2011 | Pubmed ID: 22060180 Identification of C-type Heme-containing Peptides Using Nonactivated Immobilized Metal Affinity Chromatography Resin Enrichment and Higher-energy Collisional Dissociation Analytical Chemistry. Oct, 2011 | Pubmed ID: 21740036 An Integrated Top-down and Bottom-up Strategy for Characterization of Protein Isoforms and Modifications Methods in Molecular Biology (Clifton, N.J.). 2011 | Pubmed ID: 21082441 Pressurized Pepsin Digestion in Proteomics: an Automatable Alternative to Trypsin for Integrated Top-down Bottom-up Proteomics Molecular & Cellular Proteomics : MCP. Feb, 2011 | Pubmed ID: 20627868 Two-dimensional Liquid Chromatography System for Online Top-down Mass Spectrometry Proteomics. Oct, 2010 | Pubmed ID: 20879039 A Top-down LC-FTICR MS-based Strategy for Characterizing Oxidized Calmodulin in Activated Macrophages Journal of the American Society for Mass Spectrometry. Jun, 2010 | Pubmed ID: 20417115 Quantitative Analysis of Cell Surface Membrane Proteins Using Membrane-impermeable Chemical Probe Coupled with 18O Labeling Journal of Proteome Research. May, 2010 | Pubmed ID: 20380418 Loss of the Response Regulator CtrA Causes Pleiotropic Effects on Gene Expression but Does Not Affect Growth Phase Regulation in Rhodobacter Capsulatus Journal of Bacteriology. Jun, 2010 | Pubmed ID: 20363938 FT-ICR MS Optimization for the Analysis of Intact Proteins International Journal of Mass Spectrometry. Oct, 2009 | Pubmed ID: 20473360 Integrated Workflow for Characterizing Intact Phosphoproteins from Complex Mixtures Analytical Chemistry. Jun, 2009 | Pubmed ID: 19425582 Combined Pulsed-Q Dissociation and Electron Transfer Dissociation for Identification and Quantification of ITRAQ-labeled Phosphopeptides Analytical Chemistry. May, 2009 | Pubmed ID: 19371082 Identification of a Putative Protein Profile Associated with Tamoxifen Therapy Resistance in Breast Cancer Molecular & Cellular Proteomics : MCP. Jun, 2009 | Pubmed ID: 19329653 Platelet Proteome Changes Associated with Diabetes and During Platelet Storage for Transfusion Journal of Proteome Research. May, 2009 | Pubmed ID: 19267493 Mass Spectrometry of Proteins and Peptides: Methods and Protocols. Preface Methods in Molecular Biology (Clifton, N.J.). 2009 | Pubmed ID: 19253459 An Integrated Top-down and Bottom-up Strategy for Broadly Characterizing Protein Isoforms and Modifications Journal of Proteome Research. Mar, 2009 | Pubmed ID: 19206473 Subunit Compositions of the RNA-silencing Enzymes Pol IV and Pol V Reveal Their Origins As Specialized Forms of RNA Polymerase II Molecular Cell. Jan, 2009 | Pubmed ID: 19110459 On-line Digestion System for Protein Characterization and Proteome Analysis Analytical Chemistry. Dec, 2008 | Pubmed ID: 19551971 Optimization of Proteomic Sample Preparation Procedures for Comprehensive Protein Characterization of Pathogenic Systems Journal of Biomolecular Techniques : JBT. Dec, 2008 | Pubmed ID: 19183792 Trapped-ion Cell with Improved DC Potential Harmonicity for FT-ICR MS Journal of the American Society for Mass Spectrometry. Apr, 2008 | Pubmed ID: 18296061 Proteome-wide Identification of Proteins and Their Modifications with Decreased Ambiguities and Improved False Discovery Rates Using Unique Sequence Tags Analytical Chemistry. Mar, 2008 | Pubmed ID: 18271604 A Data-mining Scheme for Identifying Peptide Structural Motifs Responsible for Different MS/MS Fragmentation Intensity Patterns Journal of Proteome Research. Jan, 2008 | Pubmed ID: 18052120 Identificación De Una Actividad Denitrase Contra Calmodulina En Macrófagos Activados Con Alto Campo Cromatografía Líquida - Espectrometría De Masas FTICR Biochemistry. Sep, 2007 | Pubmed ID: 17711305 Targeted Tandem Mass Spectrometry for High-throughput Comparative Proteomics Employing NanoLC-FTICR MS with External Ion Dissociation Journal of the American Society for Mass Spectrometry. Jul, 2007 | Pubmed ID: 17531500 Proteomic Profiling of Intact Proteins Using WAX-RPLC 2-D Separations and FTICR Mass Spectrometry Journal of Proteome Research. Feb, 2007 | Pubmed ID: 17269717 AMT Tag Approach to Proteomic Characterization of Deinococcus Radiodurans and Shewanella Oneidensis Methods of Biochemical Analysis. 2006 | Pubmed ID: 16929677 Using Size Exclusion Chromatography-RPLC and RPLC-CIEF As Two-dimensional Separation Strategies for Protein Profiling Electrophoresis. Jul, 2006 | Pubmed ID: 16732621 Statistical Characterization of the Charge State and Residue Dependence of Low-energy CID Peptide Dissociation Patterns Analytical Chemistry. Sep, 2005 | Pubmed ID: 16159109 Characterization of Purified C-type Heme-containing Peptides and Identification of C-type Heme-attachment Sites in Shewanella Oneidenis Cytochromes Using Mass Spectrometry Journal of Proteome Research. May-Jun, 2005 | Pubmed ID: 15952731 Global Profiling of Shewanella Oneidensis MR-1: Expression of Hypothetical Genes and Improved Functional Annotations Proceedings of the National Academy of Sciences of the United States of America. Feb, 2005 | Pubmed ID: 15684069 Targeted Comparative Proteomics by Liquid Chromatography-tandem Fourier Ion Cyclotron Resonance Mass Spectrometry Analytical Chemistry. Jan, 2005 | Pubmed ID: 15649034 Collisional Activation of Ions in RF Ion Traps and Ion Guides: the Effective Ion Temperature Treatment Journal of the American Society for Mass Spectrometry. Nov, 2004 | Pubmed ID: 15519229 Proteomic Analyses Using an Accurate Mass and Time Tag Strategy BioTechniques. Oct, 2004 | Pubmed ID: 15517975 Tailored Noise Waveform/collision-induced Dissociation of Ions Stored in a Linear Ion Trap Combined with Liquid Chromatography/Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Rapid Communications in Mass Spectrometry : RCM. 2004 | Pubmed ID: 15487023 Identification of Proteins in Human Cytomegalovirus (HCMV) Particles: the HCMV Proteome Journal of Virology. Oct, 2004 | Pubmed ID: 15452216 Capillary Isoelectric Focusing--mass Spectrometry of Proteins and Protein Complexes Methods in Molecular Biology (Clifton, N.J.). 2004 | Pubmed ID: 15163863 Ultrasensitive Proteomics Using High-efficiency On-line Micro-SPE-nanoLC-nanoESI MS and MS/MS Analytical Chemistry. Jan, 2004 | Pubmed ID: 14697044 High-efficiency On-line Solid-phase Extraction Coupling to 15-150-microm-i.d. Column Liquid Chromatography for Proteomic Analysis Analytical Chemistry. Jul, 2003 | Pubmed ID: 14570215 High-performance Separations and Mass Spectrometric Methods for High-throughput Proteomics Using Accurate Mass Tags Advances in Protein Chemistry. 2003 | Pubmed ID: 12964367 Identification of Tryptic Peptides from Large Databases Using Multiplexed Tandem Mass Spectrometry: Simulations and Experimental Results Proteomics. Jul, 2003 | Pubmed ID: 12872228 Use of Artificial Neural Networks for the Accurate Prediction of Peptide Liquid Chromatography Elution Times in Proteome Analyses Analytical Chemistry. Mar, 2003 | Pubmed ID: 12641221 Enrichment of Integral Membrane Proteins for Proteomic Analysis Using Liquid Chromatography-tandem Mass Spectrometry Journal of Proteome Research. Jul-Aug, 2002 | Pubmed ID: 12645891 Gene Expression Profiling Using Advanced Mass Spectrometric Approaches Journal of Mass Spectrometry : JMS. Dec, 2002 | Pubmed ID: 12489076 Increased Proteome Coverage for Quantitative Peptide Abundance Measurements Based Upon High Performance Separations and DREAMS FTICR Mass Spectrometry Journal of the American Society for Mass Spectrometry. Aug, 2002 | Pubmed ID: 12216736 Global Analysis of the Deinococcus Radiodurans Proteome by Using Accurate Mass Tags Proceedings of the National Academy of Sciences of the United States of America. Aug, 2002 | Pubmed ID: 12177431 An Accurate Mass Tag Strategy for Quantitative and High-throughput Proteome Measurements Proteomics. May, 2002 | Pubmed ID: 11987125 Direct Mass Spectrometric Analysis of Intact Proteins of the Yeast Large Ribosomal Subunit Using Capillary LC/FTICR Proceedings of the National Academy of Sciences of the United States of America. Apr, 2002 | Pubmed ID: 11983894 The Use of Accurate Mass Tags for High-throughput Microbial Proteomics Omics : a Journal of Integrative Biology. 2002 | Pubmed ID: 11881835 ESI-FTICR Mass Spectrometry Employing Data-dependent External Ion Selection and Accumulation Journal of the American Society for Mass Spectrometry. Feb, 2002 | Pubmed ID: 11838018 Aislamiento de histone del tejido de la hoja de sorgo para la perfilación de espectrometría de masas de arriba hacia abajo de marcadores epigenéticos potenciales Mowei Zhou1, Shadan H. Abdali1, David Dilworth2, Lifeng Liu2, Benjamin Cole2, Neha Malhan1, Amir H. Ahkami1, Tanya E. Winkler1, Joy Hollingsworth3, Julie Sievert3, Jeff Dahlberg3, Robert Hutmacher4,5, Mary Madera6, Judith A. Owiti6, Kim K. Hixson1, Peggy G. Lemaux6, Christer Jansson1, Ljiljana Paša-Tolić1 1Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 2DOE-Joint Genome Institute, Lawrence Berkeley Laboratory, 3Kearney Agricultural Research and Extension Center, University of California Agriculture and Natural Resources, 4West Side Research and Extension Center, University of California, 5Department of Plant Sciences, University of California, Davis, 6Department of Plant and Microbial Biology, University of California, Berkeley JoVE 61707 Biochemistry
Aislamiento de histone del tejido de la hoja de sorgo para la perfilación de espectrometría de masas de arriba hacia abajo de marcadores epigenéticos potenciales Mowei Zhou1, Shadan H. Abdali1, David Dilworth2, Lifeng Liu2, Benjamin Cole2, Neha Malhan1, Amir H. Ahkami1, Tanya E. Winkler1, Joy Hollingsworth3, Julie Sievert3, Jeff Dahlberg3, Robert Hutmacher4,5, Mary Madera6, Judith A. Owiti6, Kim K. Hixson1, Peggy G. Lemaux6, Christer Jansson1, Ljiljana Paša-Tolić1 1Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 2DOE-Joint Genome Institute, Lawrence Berkeley Laboratory, 3Kearney Agricultural Research and Extension Center, University of California Agriculture and Natural Resources, 4West Side Research and Extension Center, University of California, 5Department of Plant Sciences, University of California, Davis, 6Department of Plant and Microbial Biology, University of California, Berkeley JoVE 61707 Biochemistry