Namshin Kim Personalized Genomic Medicine Research Center, Division of Strategic Research Groups Korea Research Institute of Bioscience and Biotechnology Biography Publications Institution JoVE Articles Namshin Kim has not added a biography. If you are Namshin Kim and would like to personalize this page please email our Author Liaison for assistance. Publications Identification of Candidate Domestication Regions in the Radish Genome Based on High-depth Resequencing Analysis of 17 Genotypes TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Sep, 2016 | Pubmed ID: 27377547 Copy Number Variations in Hanwoo and Yanbian Cattle Genomes Using the Massively Parallel Sequencing Data Gene. Sep, 2016 | Pubmed ID: 27188257 Elucidating the Triplicated Ancestral Genome Structure of Radish Based on Chromosome-level Comparison with the Brassica Genomes TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Jul, 2016 | Pubmed ID: 27038817 Response to Biesecker Genetics in Medicine : Official Journal of the American College of Medical Genetics. Apr, 2016 | Pubmed ID: 26963279 CLEC4C P.K210del Variant Causes Impaired Cell Surface Transport in Plasmacytoid Dendritic Cells of Amyotrophic Lateral Sclerosis Oncotarget. May, 2016 | Pubmed ID: 26943047 Identification of Haplotypes at the Rsv4 Genomic Region in Soybean Associated with Durable Resistance to Soybean Mosaic Virus TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Mar, 2016 | Pubmed ID: 26649868 The Complete Mitochondrial Genome of Cultivated Radish WK10039 (Raphanus Sativus L.) Mitochondrial DNA. Part A, DNA Mapping, Sequencing, and Analysis. 2016 | Pubmed ID: 24937570 The Clinical Significance and Molecular Features of the Spatial Tumor Shapes in Breast Cancers PloS One. 2015 | Pubmed ID: 26669540 Prognostic and Functional Importance of the Engraftment-associated Genes in the Patient-derived Xenograft Models of Triple-negative Breast Cancers Breast Cancer Research and Treatment. Nov, 2015 | Pubmed ID: 26438141 Transcriptomic Features of Bovine Blastocysts Derived by Somatic Cell Nuclear Transfer G3 (Bethesda, Md.). Sep, 2015 | Pubmed ID: 26342001 Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants Genomics & Informatics. Jun, 2015 | Pubmed ID: 26175660 Deep Sequencing of the Medicago Truncatula Root Transcriptome Reveals a Massive and Early Interaction Between Nodulation Factor and Ethylene Signals Plant Physiology. Sep, 2015 | Pubmed ID: 26175514 Whole-genome Resequencing Analyses of Five Pig Breeds, Including Korean Wild and Native, and Three European Origin Breeds DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Aug, 2015 | Pubmed ID: 26117497 Adverse Prognostic Effect of Homozygous TET2 Mutation on the Relapse Risk of Acute Myeloid Leukemia in Patients of Normal Karyotype Haematologica. Sep, 2015 | Pubmed ID: 26045292 Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig PloS One. 2015 | Pubmed ID: 25885114 Frequency and Spectrum of Actionable Pathogenic Secondary Findings in 196 Korean Exomes Genetics in Medicine : Official Journal of the American College of Medical Genetics. Dec, 2015 | Pubmed ID: 25856671 Whole Exome Sequencing for a Patient with Rubinstein-Taybi Syndrome Reveals De Novo Variants Besides an Overt CREBBP Mutation International Journal of Molecular Sciences. Mar, 2015 | Pubmed ID: 25768348 A Genome-wide Scan for Signatures of Directional Selection in Domesticated Pigs BMC Genomics. Feb, 2015 | Pubmed ID: 25765548 Development, Validation and Genetic Analysis of a Large Soybean SNP Genotyping Array The Plant Journal : for Cell and Molecular Biology. Feb, 2015 | Pubmed ID: 25641104 Orthopaedic Manifestations and Treatment Outcome of Two Siblings with Escobar Syndrome and Homozygous Mutations in the CHRNG Gene Journal of Pediatric Orthopedics. Part B. May, 2015 | Pubmed ID: 25411939 Construction of a Reference Genetic Map of Raphanus Sativus Based on Genotyping by Whole-genome Resequencing TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Feb, 2015 | Pubmed ID: 25403353 Global Transcriptome Profiling of Genes That Are Differentially Regulated During Differentiation of Mouse Embryonic Neural Stem Cells into Astrocytes Journal of Molecular Neuroscience : MN. Jan, 2015 | Pubmed ID: 25104607 Deep Sequencing Reveals Low Incidence of Endogenous LINE-1 Retrotransposition in Human Induced Pluripotent Stem Cells PloS One. 2014 | Pubmed ID: 25289675 De Novo Assembly and Characterization of the Complete Chloroplast Genome of Radish (Raphanus Sativus L.) Gene. Nov, 2014 | Pubmed ID: 25151309 Complete Genome Sequence of Bacillus Anthracis HYU01, Isolated from Soil Samples in the Korean Peninsula Genome Announcements. Aug, 2014 | Pubmed ID: 25103761 Comparative Analysis of the Radish Genome Based on a Conserved Ortholog Set (COS) of Brassica TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Sep, 2014 | Pubmed ID: 25056003 Whole-genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing PloS One. 2014 | Pubmed ID: 24992012 Whole-exome Sequencing Identifies a Novel Genotype-phenotype Correlation in the Entactin Domain of the Known Deafness Gene TECTA PloS One. 2014 | Pubmed ID: 24816743 Dynamics of HSPC Repopulation in Nonhuman Primates Revealed by a Decade-long Clonal-tracking Study Cell Stem Cell. Apr, 2014 | Pubmed ID: 24702996 Transcription-related Element Gene Expression Pattern Differs Between Microglia and Macrophages During Inflammation Inflammation Research : Official Journal of the European Histamine Research Society ... [et Al.]. May, 2014 | Pubmed ID: 24468891 Population Structure and Domestication Revealed by High-depth Resequencing of Korean Cultivated and Wild Soybean Genomes DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. 2014 | Pubmed ID: 24271940 Analysis of the Canine Brain Transcriptome with an Emphasis on the Hypothalamus and Cerebral Cortex Mammalian Genome : Official Journal of the International Mammalian Genome Society. Dec, 2013 | Pubmed ID: 24202129 Massively Parallel Sequencing of Chikso (Korean Brindle Cattle) to Discover Genome-wide SNPs and InDels Molecules and Cells. Sep, 2013 | Pubmed ID: 23912596 Whole-genome Resequencing of Hanwoo (Korean Cattle) and Insight into Regions of Homozygosity BMC Genomics. Jul, 2013 | Pubmed ID: 23899338 Bioinformatics Interpretation of Exome Sequencing: Blood Cancer Genomics & Informatics. Mar, 2013 | Pubmed ID: 23613679 Investigation of Radiation-induced Transcriptome Profile of Radioresistant Non-small Cell Lung Cancer A549 Cells Using RNA-seq PloS One. 2013 | Pubmed ID: 23533613 A High-dimensional, Deep-sequencing Study of Lung Adenocarcinoma in Female Never-smokers PloS One. 2013 | Pubmed ID: 23405175 Dynamic Genetic Features of Chromosomes Revealed by Comparison of Soybean Genetic and Sequence-based Physical Maps TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Apr, 2013 | Pubmed ID: 23306355 Identification and Profiling of Novel MicroRNAs in the Brassica Rapa Genome Based on Small RNA Deep Sequencing BMC Plant Biology. Nov, 2012 | Pubmed ID: 23163954 Whole-exome Sequencing Identifies Mutations of KIF22 in Spondyloepimetaphyseal Dysplasia with Joint Laxity, Leptodactylic Type American Journal of Human Genetics. Dec, 2011 | Pubmed ID: 22152677 Methodology and Software to Detect Viral Integration Site Hot-spots BMC Bioinformatics. Sep, 2011 | Pubmed ID: 21914224 Draft Genome Sequence of the Paenibacillus Polymyxa Type Strain (ATCC 842T), a Plant Growth-promoting Bacterium Journal of Bacteriology. Sep, 2011 | Pubmed ID: 21742878 High-throughput, Sensitive Quantification of Repopulating Hematopoietic Stem Cell Clones Journal of Virology. Nov, 2010 | Pubmed ID: 20844053 Massive Expansions of Dscam Splicing Diversity Via Staggered Homologous Recombination During Arthropod Evolution RNA (New York, N.Y.). Jan, 2010 | Pubmed ID: 19934230 ChimerDB 2.0--a Knowledgebase for Fusion Genes Updated Nucleic Acids Research. Jan, 2010 | Pubmed ID: 19906715 Genome-wide Comparative Analysis of the Brassica Rapa Gene Space Reveals Genome Shrinkage and Differential Loss of Duplicated Genes After Whole Genome Triplication Genome Biology. 2009 | Pubmed ID: 19821981 A Transcriptional Sketch of a Primary Human Breast Cancer by 454 Deep Sequencing BMC Genomics. Apr, 2009 | Pubmed ID: 19379481 Human Immunodeficiency Virus Integration Efficiency and Site Selection in Quiescent CD4+ T Cells Journal of Virology. Jun, 2009 | Pubmed ID: 19369341 The Effect of Intron Length on Exon Creation Ratios During the Evolution of Mammalian Genomes RNA (New York, N.Y.). Nov, 2008 | Pubmed ID: 18796579 Integration Site Preference of Xenotropic Murine Leukemia Virus-related Virus, a New Human Retrovirus Associated with Prostate Cancer Journal of Virology. Oct, 2008 | Pubmed ID: 18684813 Bioinformatics Detection of Alternative Splicing Methods in Molecular Biology (Clifton, N.J.). 2008 | Pubmed ID: 18566765 QPRIMER: a Quick Web-based Application for Designing Conserved PCR Primers from Multigenome Alignments Bioinformatics (Oxford, England). Sep, 2007 | Pubmed ID: 17599926 Three-Dimensional Phylogeny Explorer: Distinguishing Paralogs, Lateral Transfer, and Violation of "molecular Clock" Assumption with 3D Visualization BMC Bioinformatics. Jun, 2007 | Pubmed ID: 17584922 Global Analysis of Exon Creation Versus Loss and the Role of Alternative Splicing in 17 Vertebrate Genomes RNA (New York, N.Y.). May, 2007 | Pubmed ID: 17369312 ECgene: an Alternative Splicing Database Update Nucleic Acids Research. Jan, 2007 | Pubmed ID: 17132829 The ASAP II Database: Analysis and Comparative Genomics of Alternative Splicing in 15 Animal Species Nucleic Acids Research. Jan, 2007 | Pubmed ID: 17108355 ChimerDB--a Knowledgebase for Fusion Sequences Nucleic Acids Research. Jan, 2006 | Pubmed ID: 16381848 ASePCR: Alternative Splicing Electronic RT-PCR in Multiple Tissues and Organs Nucleic Acids Research. Jul, 2005 | Pubmed ID: 15980562 ECgene: Genome-based EST Clustering and Gene Modeling for Alternative Splicing Genome Research. Apr, 2005 | Pubmed ID: 15805497 ECgene: Genome Annotation for Alternative Splicing Nucleic Acids Research. Jan, 2005 | Pubmed ID: 15608289 ASmodeler: Gene Modeling of Alternative Splicing from Genomic Alignment of MRNA, EST and Protein Sequences Nucleic Acids Research. Jul, 2004 | Pubmed ID: 15215376 Çift Yönlü Retroviral Entegrasyon Sitesi PCR Metodolojisi ve Kantitatif Veri Analizi İş Akışı Gajendra W. Suryawanshi*1,2, Song Xu*3, Yiming Xie1, Tom Chou3, Namshin Kim4, Irvin S. Y. Chen1,5, Sanggu Kim6 1UCLA AIDS Institute, University of California at Los Angeles (UCLA), 2Department of Microbiology, Immunology, & Molecular Genetics, University of California at Los Angeles (UCLA), 3Departments of Biomathematics and Mathematics, University of California at Los Angeles (UCLA), 4Personalized Genomic Medicine Research Center, Division of Strategic Research Groups, Korea Research Institute of Bioscience and Biotechnology, 5Department of Medicine, University of California at Los Angeles (UCLA), 6Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University (OSU) JoVE 55812 Genetics
Çift Yönlü Retroviral Entegrasyon Sitesi PCR Metodolojisi ve Kantitatif Veri Analizi İş Akışı Gajendra W. Suryawanshi*1,2, Song Xu*3, Yiming Xie1, Tom Chou3, Namshin Kim4, Irvin S. Y. Chen1,5, Sanggu Kim6 1UCLA AIDS Institute, University of California at Los Angeles (UCLA), 2Department of Microbiology, Immunology, & Molecular Genetics, University of California at Los Angeles (UCLA), 3Departments of Biomathematics and Mathematics, University of California at Los Angeles (UCLA), 4Personalized Genomic Medicine Research Center, Division of Strategic Research Groups, Korea Research Institute of Bioscience and Biotechnology, 5Department of Medicine, University of California at Los Angeles (UCLA), 6Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University (OSU) JoVE 55812 Genetics