Robert A. Edwards Department of Biology San Diego State University Biography Publications Institution JoVE Articles Robert A. Edwards has not added a biography. If you are Robert A. Edwards and would like to personalize this page please email our Author Liaison for assistance. Publications Genomic Comparison of the Closely-Related Salmonella Enterica Serovars Enteritidis, Dublin and Gallinarum PloS One. 2015 | Pubmed ID: 26039056 Multidimensional Metrics for Estimating Phage Abundance, Distribution, Gene Density, and Sequence Coverage in Metagenomes Frontiers in Microbiology. 2015 | Pubmed ID: 26005436 RASTtk: a Modular and Extensible Implementation of the RAST Algorithm for Building Custom Annotation Pipelines and Annotating Batches of Genomes Scientific Reports. 2015 | Pubmed ID: 25666585 Microbial Taxonomy in the Post-genomic Era: Rebuilding from Scratch? Archives of Microbiology. Apr, 2015 | Pubmed ID: 25533848 Sequencing at Sea: Challenges and Experiences in Ion Torrent PGM Sequencing During the 2013 Southern Line Islands Research Expedition PeerJ. 2014 | Pubmed ID: 25177534 Comparative Genomics of 274 Vibrio Cholerae Genomes Reveals Mobile Functions Structuring Three Niche Dimensions BMC Genomics. 2014 | Pubmed ID: 25096633 A Highly Abundant Bacteriophage Discovered in the Unknown Sequences of Human Faecal Metagenomes Nature Communications. 2014 | Pubmed ID: 25058116 Local Genomic Adaptation of Coral Reef-associated Microbiomes to Gradients of Natural Variability and Anthropogenic Stressors Proceedings of the National Academy of Sciences of the United States of America. Jul, 2014 | Pubmed ID: 24982156 FOCUS: an Alignment-free Model to Identify Organisms in Metagenomes Using Non-negative Least Squares PeerJ. 2014 | Pubmed ID: 24949242 Wnt Signaling Directs a Metabolic Program of Glycolysis and Angiogenesis in Colon Cancer The EMBO Journal. Jul, 2014 | Pubmed ID: 24825347 Excited State Photoreaction Between the Indole Side Chain of Tryptophan and Halocompounds Generates New Fluorophores and Unique Modifications Photochemistry and Photobiology. Sep-Oct, 2014 | Pubmed ID: 24738707 Angiogenic Sprouting is Regulated by Endothelial Cell Expression of Slug Journal of Cell Science. May, 2014 | Pubmed ID: 24554431 The Cytokine IL-22 Promotes Pathogen Colonization by Suppressing Related Commensal Bacteria Immunity. Feb, 2014 | Pubmed ID: 24508234 The SEED and the Rapid Annotation of Microbial Genomes Using Subsystems Technology (RAST) Nucleic Acids Research. Jan, 2014 | Pubmed ID: 24293654 Microbial Genomic Taxonomy BMC Genomics. 2013 | Pubmed ID: 24365132 Combining De Novo and Reference-guided Assembly with Scaffold_builder Source Code for Biology and Medicine. 2013 | Pubmed ID: 24267787 Draft Genome Sequence of the Fish Pathogen Piscirickettsia Salmonis Genome Announcements. 2013 | Pubmed ID: 24201203 Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron Cell Host & Microbe. Jul, 2013 | Pubmed ID: 23870311 Circadian Clock Regulates the Host Response to Salmonella Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013 | Pubmed ID: 23716692 Explaining Microbial Phenotypes on a Genomic Scale: GWAS for Microbes Briefings in Functional Genomics. Jul, 2013 | Pubmed ID: 23625995 Multivariate Analysis of Functional Metagenomes Frontiers in Genetics. 2013 | Pubmed ID: 23579547 Structure and Function of a Cyanophage-encoded Peptide Deformylase The ISME Journal. Jun, 2013 | Pubmed ID: 23407310 A Bioinformatic Analysis of Ribonucleotide Reductase Genes in Phage Genomes and Metagenomes BMC Evolutionary Biology. 2013 | Pubmed ID: 23391036 Applying Shannon's Information Theory to Bacterial and Phage Genomes and Metagenomes Scientific Reports. 2013 | Pubmed ID: 23301154 Intracellular Trafficking of the KV1.3 Potassium Channel is Regulated by the Prodomain of a Matrix Metalloprotease The Journal of Biological Chemistry. Mar, 2013 | Pubmed ID: 23300077 SEED Servers: High-performance Access to the SEED Genomes, Annotations, and Metabolic Models PloS One. 2012 | Pubmed ID: 23110173 Reference-independent Comparative Metagenomics Using Cross-assembly: CrAss Bioinformatics (Oxford, England). Dec, 2012 | Pubmed ID: 23074261 Real Time Metagenomics: Using K-mers to Annotate Metagenomes Bioinformatics (Oxford, England). Dec, 2012 | Pubmed ID: 23047562 Metabolic Trajectory of Cellular Differentiation in Small Intestine by Phasor Fluorescence Lifetime Microscopy of NADH Scientific Reports. 2012 | Pubmed ID: 22891156 Microfluidic PCR Combined with Pyrosequencing for Identification of Allelic Variants with Phenotypic Associations Among Targeted Salmonella Genes Applied and Environmental Microbiology. Oct, 2012 | Pubmed ID: 22885744 Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux PloS One. 2012 | Pubmed ID: 22848480 Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera Brasiliensis PloS One. 2012 | Pubmed ID: 22768320 Diversification of the Salmonella Fimbriae: a Model of Macro- and Microevolution PloS One. 2012 | Pubmed ID: 22701679 Genome-wide Study of the Defective Sucrose Fermenter Strain of Vibrio Cholerae from the Latin American Cholera Epidemic PloS One. 2012 | Pubmed ID: 22662140 MiR-23a Promotes the Transition from Indolent to Invasive Colorectal Cancer Cancer Discovery. Jun, 2012 | Pubmed ID: 22628407 PhiSpy: a Novel Algorithm for Finding Prophages in Bacterial Genomes That Combines Similarity- and Composition-based Strategies Nucleic Acids Research. Sep, 2012 | Pubmed ID: 22584627 Genome Sequences of the Ethanol-tolerant Lactobacillus Vini Strains LMG 23202T and JP7.8.9 Journal of Bacteriology. Jun, 2012 | Pubmed ID: 22582376 Genome Sequence of the Bacterioplanktonic, Mixotrophic Vibrio Campbellii Strain PEL22A, Isolated in the Abrolhos Bank Journal of Bacteriology. May, 2012 | Pubmed ID: 22535939 Muscle Sarcomas and Alopecia in A/J Mice Chronically Treated with Nicotine Life Sciences. Nov, 2012 | Pubmed ID: 22521759 CAIM 1792 对虾病原弧菌的基因组序列草图。 Journal of Bacteriology. Apr, 2012 | Pubmed ID: 22461546 由中性粒细胞蛋白质钙锌螯合增强了发炎肠道沙门氏菌增长。 Cell Host & Microbe. Mar, 2012 | Pubmed ID: 22423963 PhiSiGns: an Online Tool to Identify Signature Genes in Phages and Design PCR Primers for Examining Phage Diversity BMC Bioinformatics. 2012 | Pubmed ID: 22385976 肿瘤坏死因子-α 诱导表皮生长因子和人类结肠肌成纤维细胞信号传导的调控。 American Journal of Physiology. Gastrointestinal and Liver Physiology. Feb, 2012 | Pubmed ID: 22301110 从力钩端螺旋体沙门氏菌肠炎沙门氏菌前 ELPhiS 噬菌体的表征应变 LK5。 Applied and Environmental Microbiology. Jan, 2012 | Pubmed ID: 22247173 PHACTS,计算方法分类的噬菌体的生活方式。 Bioinformatics (Oxford, England). Jan, 2012 | Pubmed ID: 22238260 噬菌体细菌关系和瘤胃微生物宏基因组调查显示的 CRISPR 元素。 Environmental Microbiology. Jan, 2012 | Pubmed ID: 22004549 亚马孙河流域的人类病原弧菌的基因组序列。 Journal of Bacteriology. Oct, 2011 | Pubmed ID: 21952545 Α7 烟碱型受体在结肠的 CD4 T 细胞中的细胞因子诱导的改建进行调解的 Th1/Th17-与 Th2 介导结肠炎小鼠模型中的尼古丁含量二分回应。 Journal of Immunology (Baltimore, Md. : 1950). Sep, 2011 | Pubmed ID: 21784975 链接到固醇调节元件结合蛋白-1a 通过巨噬细胞的非特异性免疫反应的脂质代谢。 Cell Metabolism. May, 2011 | Pubmed ID: 21531336 尼玛相关激酶 1 (NEK1) 的突变导致染色体不稳定。 Molecular Cancer. 2011 | Pubmed ID: 21214959 访问种子基因组数据库通过 Web 服务 API: 程序员的工具。 BMC Bioinformatics. 2010 | Pubmed ID: 20546611 Transposases 是最丰富、 最无处不在的基因的性质。 Nucleic Acids Research. Jul, 2010 | Pubmed ID: 20215432 NOTCH 信号是形成和自我更新的肿瘤启动所必需的细胞和分泌细胞分化的结肠癌的镇压。 Cancer Research. Feb, 2010 | Pubmed ID: 20145124 完全无缝线腹腔镜 Heminephrectomy 生存猪模型中的牛血清白蛋白戊二醛。 Journal of Endourology / Endourological Society. Mar, 2010 | Pubmed ID: 20059350 溶源性和产孢芽孢杆菌分离株从墨西哥湾。 Applied and Environmental Microbiology. Feb, 2010 | Pubmed ID: 20008174 砷化镓宏基因组工具和其估计的病毒和微生物的平均四个主要生物群落中的基因组大小。 PLoS Computational Biology. Dec, 2009 | Pubmed ID: 20011103 表观遗传镇压的 DNA 错配修复的炎症和缺氧的炎症性肠病的相关结直肠癌。 Cancer Research. Aug, 2009 | Pubmed ID: 19638594 宏基因组分析强调珊瑚 Holobionts。 Environmental Microbiology. Aug, 2009 | Pubmed ID: 19397678 评价结果的高频电刀致肠损伤治疗组织胶/密封胶与缝合固定修复兔模型中。 Journal of Endourology / Endourological Society. Mar, 2009 | Pubmed ID: 19275489 浮标支架: 留置输尿管内的支架在猪模型原型的评价。 BJU International. Jul, 2009 | Pubmed ID: 19154469 体内淋巴密封的猪的胸导管使用腹腔镜清扫设备能力的比较研究。 The Journal of Urology. Jan, 2009 | Pubmed ID: 19010491 宏基因组分析表明压力促使生产的珊瑚滨牛鞭样疱疹病毒。 Proceedings of the National Academy of Sciences of the United States of America. Nov, 2008 | Pubmed ID: 19017800 对比宏基因组学揭示了主机特定 Metavirulomes 水平基因转移中的和元素鸡盲肠微生物组。 PloS One. 2008 | Pubmed ID: 18698407 泌尿外科组织工程骨骨髓干细胞。 World Journal of Urology. Aug, 2008 | Pubmed ID: 18654786 分离沼气反应器的产甲烷的微生物群落组成和基因内容分类。 Journal of Biotechnology. Aug, 2008 | Pubmed ID: 18611419 在婴儿肠道中的动力学和病毒性的多样性。 Research in Microbiology. Jun, 2008 | Pubmed ID: 18541415 病毒性社区健康和漂白珊瑚与相关联。 Environmental Microbiology. Sep, 2008 | Pubmed ID: 18479440 在早期发病相关结肠炎结肠癌 Gi2 Alpha/小鼠上皮时异常的作用。 Inflammatory Bowel Diseases. Jul, 2008 | Pubmed ID: 18340649 功能性宏基因组的九个生物群落分析。 Nature. Apr, 2008 | Pubmed ID: 18337718 愈合后内下和修复与纤维蛋白胶和缝合固定的封闭猪模型中的比较。 Journal of Endourology / Endourological Society. Jan, 2008 | Pubmed ID: 18315486 生物多样性与生物地理学的噬菌体在现代叠层石和 Thrombolites。 Nature. Mar, 2008 | Pubmed ID: 18311127 四个珊瑚环礁,北线群岛中的微生物生态学。 PloS One. 2008 | Pubmed ID: 18301735 系统发育分类的短环境 DNA 片段。 Nucleic Acids Research. Apr, 2008 | Pubmed ID: 18285365 经济性分析服务器: 使用子系统技术快速的批注。 BMC Genomics. 2008 | Pubmed ID: 18261238 处理由通才物种沿海海洋中的细菌碳。 Nature. Feb, 2008 | Pubmed ID: 18223640 NKG2D 受体信号通路中冠状病毒引起的神经系统和肝疾病先天主机防御的微分作用的证据。 Journal of Virology. Mar, 2008 | Pubmed ID: 18094157 宏基因组和小亚基 RRNA 分析揭示细菌、 古细菌、 真菌、 和土壤中的病毒的遗传多样性。 Applied and Environmental Microbiology. Nov, 2007 | Pubmed ID: 17827313 CXC 趋化因子配体 10 从小鼠肝炎病毒基因组的表达式的结果从病毒引起的神经系统和肝疾病的保护。 Journal of Immunology (Baltimore, Md. : 1950). Jul, 2007 | Pubmed ID: 17617609 向中蛋白质测定的色氨酸表面辅助功能标签色氨酸残留的吲哚化学的发展。 Protein Science : a Publication of the Protein Society. Jun, 2007 | Pubmed ID: 17525468 减少依赖 MAPK 和 PGE2 的白细胞介素-11 生产 Gialpha2-/-结肠肌成纤维细胞。 American Journal of Physiology. Gastrointestinal and Liver Physiology. Jun, 2007 | Pubmed ID: 17332478 国家微生物病原体数据库资源 (NMPDR): 基于子系统注释的基因组学研究平台。 Nucleic Acids Research. Jan, 2007 | Pubmed ID: 17145713 四个海洋区域的海洋 Viromes。 PLoS Biology. Nov, 2006 | Pubmed ID: 17090214 在隔离环境中的细菌群落中寻找新基因。 Bioinformatics (Oxford, England). Jul, 2006 | Pubmed ID: 16873483 Trichloroethanol 识别的质谱可视化从二维聚丙烯酰胺凝胶蛋白。 Analytical Chemistry. Apr, 2006 | Pubmed ID: 16579625 利用焦测序技术揭示深矿井微生物生态学。 BMC Genomics. 2006 | Pubmed ID: 16549033 统计中的应用比较宏基因组学。 BMC Bioinformatics. 2006 | Pubmed ID: 16549025 微分角色 CXCR3 贩卖 CD4 + 和 CD8 + T 细胞后的中枢神经系统的病毒性感染。 European Journal of Immunology. Mar, 2006 | Pubmed ID: 16479546 低分子量蛋白质酪氨酸磷酸酶枯草芽孢杆菌。 Journal of Bacteriology. Jul, 2005 | Pubmed ID: 15995210 病毒性宏基因组学。 Nature Reviews. Microbiology. Jun, 2005 | Pubmed ID: 15886693 在 G Alpha I2-/-小鼠外周血 T 细胞受损的 TGF-β 的反应。 Journal of Immunology (Baltimore, Md. : 1950). May, 2005 | Pubmed ID: 15879107 芽孢杆菌枯草蛋白酪氨酸磷酸酶 YwqE 的体外表征。 Journal of Bacteriology. May, 2005 | Pubmed ID: 15866923 马赛克 Prophages 与水平获得的基因帐户的出现和全球范围内传播 M1T1 克隆的链球菌的多样化。 Journal of Bacteriology. May, 2005 | Pubmed ID: 15866915 机器人前列腺癌根治术: 一种技术,以减少 PT2 积极边距。 Urology. Dec, 2004 | Pubmed ID: 15596205 可见荧光检测蛋白的聚丙烯酰胺凝胶不染色的情况下。 Analytical Biochemistry. Mar, 2004 | Pubmed ID: 14769330 跨国激进党-999 的 β-半乳糖苷酶 (大肠杆菌) 是一个关键的残留物,绑定、 催化,和 Allolactose,自然 Lac 操纵子诱导因子的合成。 Biochemistry. Feb, 2003 | Pubmed ID: 12578395 色氨酸与 Halocompounds 的光诱导反应。 Photochemistry and Photobiology. Apr, 2002 | Pubmed ID: 12003125 比较基因组学密切相关的沙门菌。 Trends in Microbiology. Feb, 2002 | Pubmed ID: 11827811 蛋白在使用紫外线光照的丙烯酰胺凝胶中的可视化效果。 Analytical Biochemistry. Feb, 2002 | Pubmed ID: 11811971 噬菌体型组学:生理途径来表征新型病毒蛋白 Savannah E. Sanchez1, Daniel A. Cuevas2, Jason E. Rostron1, Tiffany Y. Liang3, Cullen G. Pivaroff1, Matthew R. Haynes1, Jim Nulton4, Ben Felts4, Barbara A. Bailey4, Peter Salamon4, Robert A. Edwards1,5,6, Alex B. Burgin7, Anca M. Segall1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Computational Science Research Center, San Diego State University, 3Bioinformatics and Medical Informatics Research Center, San Diego State University, 4Department of Mathematics and Statistics, San Diego State University, 5Department of Computer Science, San Diego State University, 6Mathematics and Computer Science Division, Argonne National Laboratory, 7SPARC Committee, Broad Institute Immunology and Infection
噬菌体型组学:生理途径来表征新型病毒蛋白 Savannah E. Sanchez1, Daniel A. Cuevas2, Jason E. Rostron1, Tiffany Y. Liang3, Cullen G. Pivaroff1, Matthew R. Haynes1, Jim Nulton4, Ben Felts4, Barbara A. Bailey4, Peter Salamon4, Robert A. Edwards1,5,6, Alex B. Burgin7, Anca M. Segall1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Computational Science Research Center, San Diego State University, 3Bioinformatics and Medical Informatics Research Center, San Diego State University, 4Department of Mathematics and Statistics, San Diego State University, 5Department of Computer Science, San Diego State University, 6Mathematics and Computer Science Division, Argonne National Laboratory, 7SPARC Committee, Broad Institute Immunology and Infection