Trent R. Northen Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Biography Publications Institution JoVE Articles Trent R. Northen has not added a biography. If you are Trent R. Northen and would like to personalize this page please email our Author Liaison for assistance. Publications Dynamic Root Exudate Chemistry and Microbial Substrate Preferences Drive Patterns in Rhizosphere Microbial Community Assembly Nature Microbiology. Apr, 2018 | Pubmed ID: 29556109 An Integrated Workflow for Phenazine-modifying Enzyme Characterization Journal of Industrial Microbiology & Biotechnology. Mar, 2018 | Pubmed ID: 29546662 Linking Soil Biology and Chemistry in Biological Soil Crust Using Isolate Exometabolomics Nature Communications. 01, 2018 | Pubmed ID: 29296020 Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends in Plant Science. Jan, 2018 | Pubmed ID: 29050989 Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites Frontiers in Microbiology. 2017 | Pubmed ID: 29312276 Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, MBio. Nov, 2017 | Pubmed ID: 29138306 Exometabolomic Analysis of Cross-Feeding Metabolites Metabolites. Oct, 2017 | Pubmed ID: 28976938 SbCOMT (Bmr12) is Involved in the Biosynthesis of Tricin-lignin in Sorghum PloS One. 2017 | Pubmed ID: 28594846 A Fungal Transcription Factor Essential for Starch Degradation Affects Integration of Carbon and Nitrogen Metabolism PLoS Genetics. May, 2017 | Pubmed ID: 28467421 OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging Analytical Chemistry. Jun, 2017 | Pubmed ID: 28467051 Determination of Glycoside Hydrolase Specificities During Hydrolysis of Plant Cell Walls Using Glycome Profiling Biotechnology for Biofuels. 2017 | Pubmed ID: 28184246 Dynamic Substrate Preferences Predict Metabolic Properties of a Simple Microbial Consortium BMC Bioinformatics. Jan, 2017 | Pubmed ID: 28114881 Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (DO) Stable Isotope Probing ACS Chemical Biology. 03, 2017 | Pubmed ID: 28068058 On-chip Integration of Droplet Microfluidics and Nanostructure-initiator Mass Spectrometry for Enzyme Screening Lab on a Chip. 01, 2017 | Pubmed ID: 27957569 A Robust Gene-stacking Method Utilizing Yeast Assembly for Plant Synthetic Biology Nature Communications. Oct, 2016 | Pubmed ID: 27782150 Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses Analytical Chemistry. Oct, 2016 | Pubmed ID: 27560777 Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis MBio. 08, 2016 | Pubmed ID: 27555310 Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges MBio. 05, 2016 | Pubmed ID: 27178263 Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism Frontiers in Microbiology. 2016 | Pubmed ID: 27148214 Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition Frontiers in Microbiology. 2016 | Pubmed ID: 27014243 Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism ACS Synthetic Biology. 07, 2016 | Pubmed ID: 26885935 Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry Analytical Chemistry. Feb, 2016 | Pubmed ID: 26741735 High-throughput Platforms for Metabolomics Current Opinion in Chemical Biology. Feb, 2016 | Pubmed ID: 26544850 Multifunctional Cellulase Catalysis Targeted by Fusion to Different Carbohydrate-binding Modules Biotechnology for Biofuels. 2015 | Pubmed ID: 26697109 Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases Frontiers in Bioengineering and Biotechnology. 2015 | Pubmed ID: 26579511 Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS Frontiers in Bioengineering and Biotechnology. 2015 | Pubmed ID: 26528471 Exometabolite Niche Partitioning Among Sympatric Soil Bacteria Nature Communications. Sep, 2015 | Pubmed ID: 26392107 Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases Metabolites. Jul, 2015 | Pubmed ID: 26287255 Gut Microbiota Mediate Caffeine Detoxification in the Primary Insect Pest of Coffee Nature Communications. Jul, 2015 | Pubmed ID: 26173063 Isolation of a Significant Fraction of Non-phototroph Diversity from a Desert Biological Soil Crust Frontiers in Microbiology. 2015 | Pubmed ID: 25926821 Exometabolomics and MSI: Deconstructing How Cells Interact to Transform Their Small Molecule Environment Current Opinion in Biotechnology. Aug, 2015 | Pubmed ID: 25855407 Nanostructure Imaging Mass Spectrometry: the Role of Fluorocarbons in Metabolite Analysis and Yoctomole Level Sensitivity Methods in Molecular Biology (Clifton, N.J.). 2015 | Pubmed ID: 25361674 High Throughput Screening of Enzyme Activity with Mass Spectrometry Imaging Current Opinion in Biotechnology. Feb, 2015 | Pubmed ID: 25129648 The Lethal Cargo of Myxococcus Xanthus Outer Membrane Vesicles Frontiers in Microbiology. 2014 | Pubmed ID: 25250022 Phylogenomically Guided Identification of Industrially Relevant GH1 β-glucosidases Through DNA Synthesis and Nanostructure-initiator Mass Spectrometry ACS Chemical Biology. Sep, 2014 | Pubmed ID: 24984213 High Throughput Nanostructure-initiator Mass Spectrometry Screening of Microbial Growth Conditions for Maximal β-glucosidase Production Frontiers in Microbiology. 2013 | Pubmed ID: 24367356 "Replica-extraction-transfer" Nanostructure-initiator Mass Spectrometry Imaging of Acoustically Printed Bacteria Analytical Chemistry. Nov, 2013 | Pubmed ID: 24111681 OpenMSI: a High-performance Web-based Platform for Mass Spectrometry Imaging Analytical Chemistry. Nov, 2013 | Pubmed ID: 24087878 Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics Marine Drugs. Sep, 2013 | Pubmed ID: 24084783 Robust Automated Mass Spectra Interpretation and Chemical Formula Calculation Using Mixed Integer Linear Programming Analytical Chemistry. Oct, 2013 | Pubmed ID: 24032353 Dynamic Cyanobacterial Response to Hydration and Dehydration in a Desert Biological Soil Crust The ISME Journal. Nov, 2013 | Pubmed ID: 23739051 Mass Spectrometry Imaging for in Situ Kinetic Histochemistry Scientific Reports. 2013 | Pubmed ID: 23584513 Versatile Synthesis of Probes for High-throughput Enzyme Activity Screening Analytical and Bioanalytical Chemistry. May, 2013 | Pubmed ID: 23568610 Metabolites Associated with Adaptation of Microorganisms to an Acidophilic, Metal-rich Environment Identified by Stable-isotope-enabled Metabolomics MBio. Mar, 2013 | Pubmed ID: 23481603 Metabolic Footprinting of Mutant Libraries to Map Metabolite Utilization to Genotype ACS Chemical Biology. Jan, 2013 | Pubmed ID: 23082955 Low-dose Ionizing Radiation-induced Blood Plasma Metabolic Response in a Diverse Genetic Mouse Population Radiation Research. Dec, 2012 | Pubmed ID: 23051006 Encoding Substrates with Mass Tags to Resolve Stereospecific Reactions Using Nimzyme Rapid Communications in Mass Spectrometry : RCM. Mar, 2012 | Pubmed ID: 22328213 Untargeted Metabolic Footprinting Reveals a Surprising Breadth of Metabolite Uptake and Release by Synechococcus Sp. PCC 7002 Molecular BioSystems. Dec, 2011 | Pubmed ID: 21935552 Multivariate Analysis of a 3D Mass Spectral Image for Examining Tissue Heterogeneity Integrative Biology : Quantitative Biosciences from Nano to Macro. Apr, 2011 | Pubmed ID: 21212877 Metabolome-proteome Differentiation Coupled to Microbial Divergence MBio. Oct, 2010 | Pubmed ID: 20978538 Metabolite Identification in Synechococcus Sp. PCC 7002 Using Untargeted Stable Isotope Assisted Metabolite Profiling Analytical Chemistry. Nov, 2010 | Pubmed ID: 20945921 Mass Spectrometry-based Metabolomics, Analysis of Metabolite-protein Interactions, and Imaging BioTechniques. Aug, 2010 | Pubmed ID: 20701590 Dealing with the Unknown: Metabolomics and Metabolite Atlases Journal of the American Society for Mass Spectrometry. Sep, 2010 | Pubmed ID: 20452782 Rapid Screening of Fatty Acids Using Nanostructure-initiator Mass Spectrometry Analytical Chemistry. May, 2010 | Pubmed ID: 20356051 Mass Spectrometry Based Metabolomics and Enzymatic Assays for Functional Genomics Current Opinion in Microbiology. Oct, 2009 | Pubmed ID: 19695948 Phosphonium Labeling for Increasing Metabolomic Coverage of Neutral Lipids Using Electrospray Ionization Mass Spectrometry Rapid Communications in Mass Spectrometry : RCM. Jun, 2009 | Pubmed ID: 19449318 A Nanostructure-initiator Mass Spectrometry-based Enzyme Activity Assay Proceedings of the National Academy of Sciences of the United States of America. Mar, 2008 | Pubmed ID: 18319341 Экосистема изготовление (EcoFAB) протоколы для строительства лаборатории экосистем, предназначенных для изучения растений микробных взаимодействий Jian Gao1,2, Joelle Sasse1,2, Kyle M. Lewald1,2, Kateryna Zhalnina1,2, Lloyd T. Cornmesser1,2, Todd A. Duncombe3, Yasuo Yoshikuni2, John P. Vogel2, Mary K. Firestone4, Trent R. Northen1,2 1Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, 2Joint Genome Institute, Department of Energy, 3Joint BioEnergy Institute, 4Department of Environmental Science Policy and Management, University of California JoVE 57170 Environment
Экосистема изготовление (EcoFAB) протоколы для строительства лаборатории экосистем, предназначенных для изучения растений микробных взаимодействий Jian Gao1,2, Joelle Sasse1,2, Kyle M. Lewald1,2, Kateryna Zhalnina1,2, Lloyd T. Cornmesser1,2, Todd A. Duncombe3, Yasuo Yoshikuni2, John P. Vogel2, Mary K. Firestone4, Trent R. Northen1,2 1Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, 2Joint Genome Institute, Department of Energy, 3Joint BioEnergy Institute, 4Department of Environmental Science Policy and Management, University of California JoVE 57170 Environment