Niranjan Nagarajan Computational and Systems Biology, Genome Institute of Singapore A*STAR Biography Publications Institution JoVE Articles Niranjan Nagarajan has not added a biography. If you are Niranjan Nagarajan and would like to personalize this page please email our Author Liaison for assistance. Publications Transcriptomics Analysis Reveals Putative Genes Involved in Biofilm Formation and Biofilm-associated Drug Resistance of Enterococcus Faecalis Journal of Endodontics. Apr, 2017 | Pubmed ID: 28457636 Development of a Genetically Programed Vanillin-sensing Bacterium for High-throughput Screening of Lignin-degrading Enzyme Libraries Biotechnology for Biofuels. 2017 | Pubmed ID: 28174601 Fast and Accurate De Novo Genome Assembly from Long Uncorrected Reads Genome Research. May, 2017 | Pubmed ID: 28100585 Whole Metagenome Profiling Reveals Skin Microbiome-dependent Susceptibility to Atopic Dermatitis Flare Nature Microbiology. Jul, 2016 | Pubmed ID: 27562258 INC-Seq: Accurate Single Molecule Reads Using Nanopore Sequencing GigaScience. Aug, 2016 | Pubmed ID: 27485345 Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis Viverrini Associated Cholangiocarcinoma EBioMedicine. Jun, 2016 | Pubmed ID: 27428430 @MInter: Automated Text-mining of Microbial Interactions Bioinformatics (Oxford, England). Oct, 2016 | Pubmed ID: 27312413 In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation Molecular Cell. May, 2016 | Pubmed ID: 27184079 OPERA-LG: Efficient and Exact Scaffolding of Large, Repeat-rich Eukaryotic Genomes with Performance Guarantees Genome Biology. May, 2016 | Pubmed ID: 27169502 Fast and Sensitive Mapping of Nanopore Sequencing Reads with GraphMap Nature Communications. Apr, 2016 | Pubmed ID: 27079541 Predicting Microbial Interactions Through Computational Approaches Methods (San Diego, Calif.). Jun, 2016 | Pubmed ID: 27025964 OPTIMA: Sensitive and Accurate Whole-genome Alignment of Error-prone Genomic Maps by Combinatorial Indexing and Technology-agnostic Statistical Analysis GigaScience. 2016 | Pubmed ID: 26793302 Mutational Spectrum of Barrett's Stem Cells Suggests Paths to Initiation of a Precancerous Lesion Nature Communications. Jan, 2016 | Pubmed ID: 26783136 In Vitro and in Vivo Correlates of Physiological and Neoplastic Human Fallopian Tube Stem Cells The Journal of Pathology. Mar, 2016 | Pubmed ID: 26415052 Single-molecule Optical Genome Mapping of a Human HapMap and a Colorectal Cancer Cell Line GigaScience. 2015 | Pubmed ID: 26719794 Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin PLoS Genetics. Nov, 2015 | Pubmed ID: 26539826 Direct Whole-genome Deep-sequencing of Human Respiratory Syncytial Virus A and B from Vietnamese Children Identifies Distinct Patterns of Inter- and Intra-host Evolution The Journal of General Virology. Dec, 2015 | Pubmed ID: 26407694 Analysis of Dengue Virus Genetic Diversity During Human and Mosquito Infection Reveals Genetic Constraints PLoS Neglected Tropical Diseases. 2015 | Pubmed ID: 26327586 Tracking Dengue Virus Intra-host Genetic Diversity During Human-to-Mosquito Transmission PLoS Neglected Tropical Diseases. 2015 | Pubmed ID: 26325059 Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity Cell Reports. Jul, 2015 | Pubmed ID: 26146084 Cloning and Variation of Ground State Intestinal Stem Cells Nature. Jun, 2015 | Pubmed ID: 26040716 High-depth Sequencing of over 750 Genes Supports Linear Progression of Primary Tumors and Metastases in Most Patients with Liver-limited Metastatic Colorectal Cancer Genome Biology. Feb, 2015 | Pubmed ID: 25808843 Patient-specific Driver Gene Prediction and Risk Assessment Through Integrated Network Analysis of Cancer Omics Profiles Nucleic Acids Research. Apr, 2015 | Pubmed ID: 25572314 The Importance of Study Design for Detecting Differentially Abundant Features in High-throughput Experiments Genome Biology. Dec, 2014 | Pubmed ID: 25517037 BAsE-Seq: a Method for Obtaining Long Viral Haplotypes from Short Sequence Reads Genome Biology. 2014 | Pubmed ID: 25406369 Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides Mccartyi Strain SG1, Which Carries a Circular Putative Plasmid Genome Announcements. Oct, 2014 | Pubmed ID: 25278523 Systems Consequences of Amplicon Formation in Human Breast Cancer Genome Research. Oct, 2014 | Pubmed ID: 25186909 Genomic Characterization of Three Unique Dehalococcoides That Respire on Persistent Polychlorinated Biphenyls Proceedings of the National Academy of Sciences of the United States of America. Aug, 2014 | Pubmed ID: 25028492 The Opisthorchis Viverrini Genome Provides Insights into Life in the Bile Duct Nature Communications. Jul, 2014 | Pubmed ID: 25007141 Next-generation Whole Genome Sequencing of Dengue Virus Methods in Molecular Biology (Clifton, N.J.). 2014 | Pubmed ID: 24696338 Genome Sequencing of Four Strains of Rickettsia Prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate Genome Announcements. Jun, 2013 | Pubmed ID: 23814035 Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S RRNA Amplicon Sequences PloS One. 2013 | Pubmed ID: 23579286 Sequence Assembly Demystified Nature Reviews. Genetics. Mar, 2013 | Pubmed ID: 23358380 The Draft Genome of Sweet Orange (Citrus Sinensis) Nature Genetics. Jan, 2013 | Pubmed ID: 23179022 Whole-genome Reconstruction and Mutational Signatures in Gastric Cancer Genome Biology. Dec, 2012 | Pubmed ID: 23237666 LoFreq: a Sequence-quality Aware, Ultra-sensitive Variant Caller for Uncovering Cell-population Heterogeneity from High-throughput Sequencing Datasets Nucleic Acids Research. Dec, 2012 | Pubmed ID: 23066108 Long Span DNA Paired-end-tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-point-guided Reconstruction of Amplicons PloS One. 2012 | Pubmed ID: 23029419 A Randomized, Double-blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients The Journal of Infectious Diseases. Jul, 2012 | Pubmed ID: 22807519 Genome Mapping on Nanochannel Arrays for Structural Variation Analysis and Sequence Assembly Nature Biotechnology. Jul, 2012 | Pubmed ID: 22797562 Exome Sequencing of Gastric Adenocarcinoma Identifies Recurrent Somatic Mutations in Cell Adhesion and Chromatin Remodeling Genes Nature Genetics. Apr, 2012 | Pubmed ID: 22484628 A Common BIM Deletion Polymorphism Mediates Intrinsic Resistance and Inferior Responses to Tyrosine Kinase Inhibitors in Cancer Nature Medicine. 2012 | Pubmed ID: 22426421 Opera: Reconstructing Optimal Genomic Scaffolds with High-throughput Paired-end Sequences Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Nov, 2011 | Pubmed ID: 21929371 Comprehensive Long-span Paired-end-tag Mapping Reveals Characteristic Patterns of Structural Variations in Epithelial Cancer Genomes Genome Research. May, 2011 | Pubmed ID: 21467267 GiRaF: Robust, Computational Identification of Influenza Reassortments Via Graph Mining Nucleic Acids Research. Mar, 2011 | Pubmed ID: 21177643 Sequencing and Genome Assembly Using Next-generation Technologies Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20835789 Finishing Genomes with Limited Resources: Lessons from an Ensemble of Microbial Genomes BMC Genomics. Apr, 2010 | Pubmed ID: 20398345 Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Mar, 2010 | Pubmed ID: 20377460 Alignment and Clustering of Phylogenetic Markers--implications for Microbial Diversity Studies BMC Bioinformatics. Mar, 2010 | Pubmed ID: 20334679 Genomic Characterization of the Yersinia Genus Genome Biology. 2010 | Pubmed ID: 20047673 2009 Swine-origin Influenza A (H1N1) Resembles Previous Influenza Isolates PloS One. 2009 | Pubmed ID: 19636415 Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jul, 2009 | Pubmed ID: 19580519 Complete Genome Sequence of Aggregatibacter (Haemophilus) Aphrophilus NJ8700 Journal of Bacteriology. Jul, 2009 | Pubmed ID: 19447908 Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples PLoS Computational Biology. Apr, 2009 | Pubmed ID: 19360128 The Draft Genome of the Transgenic Tropical Fruit Tree Papaya (Carica Papaya Linnaeus) Nature. Apr, 2008 | Pubmed ID: 18432245 Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps Bioinformatics (Oxford, England). May, 2008 | Pubmed ID: 18356192 FAST: Fourier Transform Based Algorithms for Significance Testing of Ungapped Multiple Alignments Bioinformatics (Oxford, England). Feb, 2008 | Pubmed ID: 18180239 Apples to Apples: Improving the Performance of Motif Finders and Their Significance Analysis in the Twilight Zone Bioinformatics (Oxford, England). Jul, 2006 | Pubmed ID: 16873498 Computing the P-value of the Information Content from an Alignment of Multiple Sequences Bioinformatics (Oxford, England). Jun, 2005 | Pubmed ID: 15961473 Automatic Prediction of Protein Domains from Sequence Information Using a Hybrid Learning System Bioinformatics (Oxford, England). Jun, 2004 | Pubmed ID: 14962932 Kartläggning av RNA-RNA-interaktioner globalt med användning av biotinylerad psoralen Jong Ghut Ashley Aw1, Yang Shen2, Niranjan Nagarajan2, Yue Wan1 1Stem Cell and Regenerative Biology, Genome Institute of Singapore, A*STAR, 2Computational and Systems Biology, Genome Institute of Singapore, A*STAR JoVE 55255 Genetica
Kartläggning av RNA-RNA-interaktioner globalt med användning av biotinylerad psoralen Jong Ghut Ashley Aw1, Yang Shen2, Niranjan Nagarajan2, Yue Wan1 1Stem Cell and Regenerative Biology, Genome Institute of Singapore, A*STAR, 2Computational and Systems Biology, Genome Institute of Singapore, A*STAR JoVE 55255 Genetica