Richard M. Murray Biology and Biological Engineering California Institute of Technology Biography Publications Institution JoVE Articles Richard M. Murray has not added a biography. If you are Richard M. Murray and would like to personalize this page please email our Author Liaison for assistance. Publications A MATLAB Toolbox for Modeling Genetic Circuits in Cell-free Systems Synthetic Biology (Oxford, England). 2021 | Pubmed ID: 33981862 Guiding Ethical Principles in Engineering Biology Research ACS Synthetic Biology. 05, 2021 | Pubmed ID: 33977723 Synthetic Logic Circuits Using RNA Aptamer Against T7 RNA Polymerase Biotechnology Journal. Apr, 2021 | Pubmed ID: 33813787 Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop ACS Synthetic Biology. 07, 2020 | Pubmed ID: 32525658 Guidelines for Designing the Antithetic Feedback Motif Physical Biology. 08, 2020 | Pubmed ID: 32217822 Analysis of Primitive Genetic Interactions for the Design of a Genetic Signal Differentiator Synthetic Biology (Oxford, England). 2019 | Pubmed ID: 32995540 A Method for Cost-effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-driven Expression Archives of Biochemistry and Biophysics. 10, 2019 | Pubmed ID: 31326518 Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks Cell Systems. 07, 2019 | Pubmed ID: 31279505 Construction of Incoherent Feedforward Loop Circuits in a Cell-Free System and in Cells ACS Synthetic Biology. 03, 2019 | Pubmed ID: 30790525 On-chip Membrane Protein Cell-free Expression Enables Development of a Direct Binding Assay: A Curious Case of Potassium Channel KcsA-Kv1.3 Analytical Biochemistry. 09, 2018 | Pubmed ID: 29936096 Cell-Free and In Vivo Characterization of Lux, Las, and Rpa Quorum Activation Systems in E. coli ACS Synthetic Biology. 02, 2018 | Pubmed ID: 29120612 Cell-free Extract Based Optimization of Biomolecular Circuits with Droplet Microfluidics Lab on a Chip. 09, 2017 | Pubmed ID: 28770936 Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks Cell Systems. Jul, 2017 | Pubmed ID: 28734826 Recursively Constructing Analytic Expressions for Equilibrium Distributions of Stochastic Biochemical Reaction Networks Journal of the Royal Society, Interface. 05, 2017 | Pubmed ID: 28566513 Design of a Toolbox of RNA Thermometers ACS Synthetic Biology. 08, 2017 | Pubmed ID: 28437108 The Effects of Time-varying Temperature on Delays in Genetic Networks SIAM Journal on Applied Dynamical Systems. 2016 | Pubmed ID: 29081723 Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks SIAM Journal on Applied Dynamical Systems. 2016 | Pubmed ID: 28936130 A Population-based Temporal Logic Gate for Timing and Recording Chemical Events Molecular Systems Biology. 05, 2016 | Pubmed ID: 27193783 Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor ACS Synthetic Biology. Apr, 2016 | Pubmed ID: 26262913 Rapid Cell-free Forward Engineering of Novel Genetic Ring Oscillators ELife. Oct, 2015 | Pubmed ID: 26430766 An Analytical Approach to Bistable Biological Circuit Discrimination Using Real Algebraic Geometry Journal of the Royal Society, Interface. Jul, 2015 | Pubmed ID: 26109633 Characterizing and Prototyping Genetic Networks with Cell-free Transcription-translation Reactions Methods (San Diego, Calif.). Sep, 2015 | Pubmed ID: 26022922 Population Diversification in a Yeast Metabolic Program Promotes Anticipation of Environmental Shifts PLoS Biology. Jan, 2015 | Pubmed ID: 25626086 Design and Implementation of a Biomolecular Concentration Tracker ACS Synthetic Biology. Feb, 2015 | Pubmed ID: 24847683 Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-free Transcription-translation (TX-TL) Systems ACS Synthetic Biology. May, 2015 | Pubmed ID: 24621257 Synthetic Circuit for Exact Adaptation and Fold-change Detection Nucleic Acids Research. May, 2014 | Pubmed ID: 24728988 Gene Circuit Performance Characterization and Resource Usage in a Cell-free "breadboard" ACS Synthetic Biology. Jun, 2014 | Pubmed ID: 24670245 Flying Drosophila Stabilize Their Vision-based Velocity Controller by Sensing Wind with Their Antennae Proceedings of the National Academy of Sciences of the United States of America. Apr, 2014 | Pubmed ID: 24639532 Linear DNA for Rapid Prototyping of Synthetic Biological Circuits in an Escherichia Coli Based TX-TL Cell-free System ACS Synthetic Biology. Jun, 2014 | Pubmed ID: 24303785 Discriminating External and Internal Causes for Heading Changes in Freely Flying Drosophila PLoS Computational Biology. 2013 | Pubmed ID: 23468601 Synergistic Dual Positive Feedback Loops Established by Molecular Sequestration Generate Robust Bimodal Response Proceedings of the National Academy of Sciences of the United States of America. Nov, 2012 | Pubmed ID: 23150580 Autonomous Driving in Urban Environments: Approaches, Lessons and Challenges Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences. Oct, 2010 | Pubmed ID: 20819826 Controlling Biological Networks by Time-delayed Signals Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences. Jan, 2010 | Pubmed ID: 20008410 Flight Dynamics and Control of Evasive Maneuvers: the Fruit Fly's Takeoff IEEE Transactions on Bio-medical Engineering. Sep, 2009 | Pubmed ID: 19643699 Dynamics and Stability of a Class of Low Reynolds Number Swimmers Near a Wall Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Apr, 2009 | Pubmed ID: 19518287 Regulatory Activity Revealed by Dynamic Correlations in Gene Expression Noise Nature Genetics. Dec, 2008 | Pubmed ID: 19029898 Rapid Characterization of Genetic Parts with Cell-Free Systems John B. McManus1,2, Casey B. Bernhards3,4, Caitlin E. Sharpes3,4, David C. Garcia2,4, Stephanie D. Cole4, Richard M. Murray2, Peter A. Emanuel4, Matthew W. Lux4 1US Army Combat Capabilities Development Command Army Research Laboratory, 2Biology and Biological Engineering, California Institute of Technology, 3Excet, Inc., 4US Army Combat Capabilities Development Command Chemical Biological Center JoVE 62816 Bioingegneria Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology Zachary Z. Sun*1, Clarmyra A. Hayes*2, Jonghyeon Shin3, Filippo Caschera4, Richard M. Murray2, Vincent Noireaux4 1Department of Biology, California Institute of Technology, 2Department of Bioengineering, California Institute of Technology, 3Synthetic Biology Center, Department of Bioengineering, Massachusetts Institute of Technology, 4School of Physics and Astronomy, University of Minnesota JoVE 50762 Biologia
Rapid Characterization of Genetic Parts with Cell-Free Systems John B. McManus1,2, Casey B. Bernhards3,4, Caitlin E. Sharpes3,4, David C. Garcia2,4, Stephanie D. Cole4, Richard M. Murray2, Peter A. Emanuel4, Matthew W. Lux4 1US Army Combat Capabilities Development Command Army Research Laboratory, 2Biology and Biological Engineering, California Institute of Technology, 3Excet, Inc., 4US Army Combat Capabilities Development Command Chemical Biological Center JoVE 62816 Bioingegneria
Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology Zachary Z. Sun*1, Clarmyra A. Hayes*2, Jonghyeon Shin3, Filippo Caschera4, Richard M. Murray2, Vincent Noireaux4 1Department of Biology, California Institute of Technology, 2Department of Bioengineering, California Institute of Technology, 3Synthetic Biology Center, Department of Bioengineering, Massachusetts Institute of Technology, 4School of Physics and Astronomy, University of Minnesota JoVE 50762 Biologia