生化学、問題118、ChIPのエキソチップ-seqの、チップ、転写、遺伝子調節、クロマチン、エピジェネティクス、転写因子、分子生物学 Protocols and Video Articles

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CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data

Authors

Author

Simone G. Riva^1,2, Emily Georgiades^1,2, E. Ravza Gur^1,2, Matthew Baxter^1,2,3, Jim R. Hughes^1,2

Institution

¹MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, ²MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, ³Division of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford

Journal (Genetics)

A Semiautomated ChIP-Seq Procedure for Large-scale Epigenetic Studies

Authors

Author

Justin Cayford¹, Sara Herrera-de la Mata¹, Benjamin Joachim Schmiedel¹, Vivek Chandra¹, Pandurangan Vijayanad¹, Grégory Seumois¹

Institution

¹Division of Vaccine Discovery, La Jolla Institute for Immunology

Journal (Biology)

CARIP-Seq and ChIP-Seq: Methods to Identify Chromatin-Associated RNAs and Protein-DNA Interactions in Embryonic Stem Cells

Authors

Author

Benjamin L. Kidder^1,2

Institution

¹Department of Oncology, Wayne State University School of Medicine, ²Karmanos Cancer Institute, Wayne State University School of Medicine

Journal (Developmental Biology)

Automating ChIP-seq Experiments to Generate Epigenetic Profiles on 10,000 HeLa Cells

Authors

Author

Geoffrey Berguet¹, Jan Hendrickx¹, Celine Sabatel¹, Miklos Laczik¹, Sharon Squazzo², Ignacio Mazon Pelaez², Rini Saxena², Helene Pendeville¹, Dominique Poncelet¹

Institution

¹Diagenode S.A., ²Diagenode Inc.

Journal (Biology)

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq

Authors

Author

George E. Gentsch¹, Ilya Patrushev¹, James C. Smith¹

Institution

¹Division of Systems Biology, MRC National Institute for Medical Research

Journal (Developmental Biology)

Generation of High Quality Chromatin Immunoprecipitation DNA Template for High-throughput Sequencing (ChIP-seq)

Authors

Author

Sandra Deliard¹, Jianhua Zhao¹, Qianghua Xia¹, Struan F.A. Grant^1,2

Institution

¹Division of Human Genetics, Children's Hospital of Philadelphia Research Institute, ²Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania

Journal (Biology)

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Education

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RNA-Seq

Science Education (Advanced Biology)

RNA-seq

JoVE Core (Core: Biologia molecular)

Chromatin Immunoprecipitation- ChIP

JoVE Core (Core: Biologia molecular)

Immunoprecipitation

JoVE Core (Core: Cell Biology)

DNA Microarrays

JoVE Core (Core: Biologia molecular)

Expression Profiling with Microarrays

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