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Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

JoVE Journal
Biology

This content is Free Access.

JoVE Journal Biology

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

DOI:

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08:09 min

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June 17, 2012

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Takayuki Tohge, Alisdair R. Fernie

¹Molekulare Pflanzenphysiologie,Max-Planck-Institut

Chapters

00:05Title
01:31Extraction and Metabolite Profiling by LC-MS
03:06Data Analysis and Prediction of Metabolic Pathway and Gene List
04:31Co-expressed Gene Analysis
05:41Integration of All Information to Predict New Pathways
07:02Results: Co-regulation Network Analysis of the Anthocyanin Pathway
07:52Conclusion

Summary

Automatic Translation

Combination of genomics, co-expression gene analysis and the identification of target compounds via metabolism give gene functional annotation.

Tags

Plant Gene Function Genomics Metabolomics Informatics Gene Annotation Co-expression Gene Analysis Target Genes Metabolic Process Target Compounds Metabolomics Forward Genetics Reverse Genetics Secondary Metabolites Plant Metabolism

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