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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
JoVE Journal
Genetics
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JoVE Journal Genetics
RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA

DOI:
10.3791/57379-v

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09:36 min

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April 10, 2018

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, , , , , , ,
1CNRS, CRN2M-UMR7286, Faculté de Médecine Nord,Aix-Marseille Université, 2Plate-forme d’imagerie MRI, UMS3426, CNRS 141,Institut de Génétique Humaine

Chapters

  • 00:04Title
  • 01:29Cultured Cell and Tissue Crosslinking, Lysis, and Sonication
  • 04:09RNA Pull-down
  • 06:33Results: RNA Pull-down to Identify Targets of IncRNAs, Neat1, and Malat1
  • 08:25Conclusion

Summary

Automatic Translation

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This RNA pull-down method allows identifying the RNA targets of a long non-coding RNA (lncRNA). Based on the hybridization of home-made, designed anti-sense DNA oligonucleotide probes specific to this lncRNA in an appropriately fixed tissue or cell line, it efficiently allows the capture of all RNA targets of the lncRNA.

Tags

RNA Pull-downLong Non-coding RNARNA TargetsRNA RegulationChIRPCHARTBioinformaticsGH4C1 CellsCross-linkingCell CultureLysis Buffer

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