Roman Stocker Department of Civil, Environmental and Geomatic Engineering, Institute of Environmental Engineering ETH Zurich Biography Publications Institution JoVE Articles Roman Stocker has not added a biography. If you are Roman Stocker and would like to personalize this page please email our Author Liaison for assistance. Publications Using High-Sensitivity Lipidomics To Assess Microscale Heterogeneity in Oceanic Sinking Particles and Single Phytoplankton Cells Environmental Science & Technology. Nov, 2021 | Pubmed ID: 34724376 Coral Mucus Rapidly Induces Chemokinesis and Genome-wide Transcriptional Shifts Toward Early Pathogenesis in a Bacterial Coral Pathogen The ISME Journal. Jun, 2021 | Pubmed ID: 34168314 A Distinct Growth Physiology Enhances Bacterial Growth Under Rapid Nutrient Fluctuations Nature Communications. 06, 2021 | Pubmed ID: 34135315 Mechanistic Model of Nutrient Uptake Explains Dichotomy Between Marine Oligotrophic and Copiotrophic Bacteria PLoS Computational Biology. 05, 2021 | Pubmed ID: 34010286 Nutrient Complexity Triggers Transitions Between Solitary and Colonial Growth in Bacterial Populations The ISME Journal. 09, 2021 | Pubmed ID: 33731836 ARC: An Open Web-Platform for Request/Supply Matching for a Prioritized and Controlled COVID-19 Response Frontiers in Public Health. 2021 | Pubmed ID: 33665184 An Interdisciplinary and Application-oriented Approach to Teach Microfluidics Biomicrofluidics. Jan, 2021 | Pubmed ID: 33537111 Bistability in Oxidative Stress Response Determines the Migration Behavior of Phytoplankton in Turbulence Proceedings of the National Academy of Sciences of the United States of America. 02, 2021 | Pubmed ID: 33495340 Roadmap on Emerging Concepts in the Physical Biology of Bacterial Biofilms: from Surface Sensing to Community Formation Physical Biology. Jun, 2021 | Pubmed ID: 33462162 Sequential Capillarity-assisted Particle Assembly in a Microfluidic Channel Lab on a Chip. 03, 2021 | Pubmed ID: 33427254 Environmental Fluctuations and Their Effects on Microbial Communities, Populations and Individuals FEMS Microbiology Reviews. Aug, 2021 | Pubmed ID: 33338228 Optofluidic Raman-activated Cell Sorting for Targeted Genome Retrieval or Cultivation of Microbial Cells with Specific Functions Nature Protocols. 02, 2021 | Pubmed ID: 33311714 Rational Design of a Microbial Consortium of Mucosal Sugar Utilizers Reduces Clostridiodes Difficile Colonization Nature Communications. 10, 2020 | Pubmed ID: 33037214 Trophic Interactions and the Drivers of Microbial Community Assembly Current Biology : CB. 10, 2020 | Pubmed ID: 33022263 Constrained Optimal Foraging by Marine Bacterioplankton on Particulate Organic Matter Proceedings of the National Academy of Sciences of the United States of America. 10, 2020 | Pubmed ID: 32973087 PhenoChip: A Single-cell Phenomic Platform for High-throughput Photophysiological Analyses of Microalgae Science Advances. Sep, 2020 | Pubmed ID: 32917592 Flagellar Kinematics Reveals the Role of Environment in Shaping Sperm Motility Journal of the Royal Society, Interface. 09, 2020 | Pubmed ID: 32900303 Bursts Characterize Coagulation of Rods in a Quiescent Fluid Physical Review Letters. Jun, 2020 | Pubmed ID: 32639757 The Effect of Flow on Swimming Bacteria Controls the Initial Colonization of Curved Surfaces Nature Communications. 06, 2020 | Pubmed ID: 32503979 Single-cell Bacterial Transcription Measurements Reveal the Importance of Dimethylsulfoniopropionate (DMSP) Hotspots in Ocean Sulfur Cycling Nature Communications. Apr, 2020 | Pubmed ID: 32327645 Raman-based Sorting of Microbial Cells to Link Functions to Their Genes Microbial Cell (Graz, Austria). Feb, 2020 | Pubmed ID: 32161766 Bacterial Glycogen Provides Short-Term Benefits in Changing Environments Applied and Environmental Microbiology. Apr, 2020 | Pubmed ID: 32111592 On the Collision of Rods in a Quiescent Fluid Proceedings of the National Academy of Sciences of the United States of America. Feb, 2020 | Pubmed ID: 32015116 Chain Formation Can Enhance the Vertical Migration of Phytoplankton Through Turbulence Science Advances. 10, 2019 | Pubmed ID: 31663017 Not Just Going with the Flow: The Effects of Fluid Flow on Bacteria and Plankton Annual Review of Cell and Developmental Biology. 10, 2019 | Pubmed ID: 31412210 Bacterial Maze Runners Reveal Hidden Diversity in Chemotactic Performance Microbial Cell (Graz, Austria). Jul, 2019 | Pubmed ID: 31403051 Bacteria Push the Limits of Chemotactic Precision to Navigate Dynamic Chemical Gradients Proceedings of the National Academy of Sciences of the United States of America. May, 2019 | Pubmed ID: 31097577 Bacterial Chemotaxis in a Microfluidic T-maze Reveals Strong Phenotypic Heterogeneity in Chemotactic Sensitivity Nature Communications. 04, 2019 | Pubmed ID: 31015402 Publisher Correction: An Automated Raman-based Platform for the Sorting of Live Cells by Functional Properties Nature Microbiology. May, 2019 | Pubmed ID: 30980037 The Role of Microbial Motility and Chemotaxis in Symbiosis Nature Reviews. Microbiology. 05, 2019 | Pubmed ID: 30923350 An Automated Raman-based Platform for the Sorting of Live Cells by Functional Properties Nature Microbiology. 06, 2019 | Pubmed ID: 30886359 A Foraging Mandala for Aquatic Microorganisms The ISME Journal. 03, 2019 | Pubmed ID: 30446738 Synthesis and Degradation of FtsZ Quantitatively Predict the First Cell Division in Starved Bacteria Molecular Systems Biology. 11, 2018 | Pubmed ID: 30397005 Heterologous Expression of Pseudomonas Putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia Coli Cells Chemotactic to Aromatic Compounds Applied and Environmental Microbiology. 09, 2018 | Pubmed ID: 30006400 Redefining the Sponge-symbiont Acquisition Paradigm: Sponge Microbes Exhibit Chemotaxis Towards Host-derived Compounds Environmental Microbiology Reports. Dec, 2017 | Pubmed ID: 28892304 A Microfluidics-based in Situ Chemotaxis Assay to Study the Behaviour of Aquatic Microbial Communities Nature Microbiology. Oct, 2017 | Pubmed ID: 28848238 Logarithmic Sensing in Aerotaxis NPJ Systems Biology and Applications. 2017 | Pubmed ID: 28725484 Biofilm Disruption by an Air Bubble Reveals Heterogeneous Age-dependent Detachment Patterns Dictated by Initial Extracellular Matrix Distribution NPJ Biofilms and Microbiomes. 2017 | Pubmed ID: 28649407 Zooming in on the Phycosphere: the Ecological Interface for Phytoplankton-bacteria Relationships Nature Microbiology. May, 2017 | Pubmed ID: 28555622 High-avidity IgA Protects the Intestine by Enchaining Growing Bacteria Nature. 04, 2017 | Pubmed ID: 28405025 Dual Function of Tropodithietic Acid As Antibiotic and Signaling Molecule in Global Gene Regulation of the Probiotic Bacterium Phaeobacter Inhibens Scientific Reports. 04, 2017 | Pubmed ID: 28389641 Deployable Micro-traps to Sequester Motile Bacteria Scientific Reports. 04, 2017 | Pubmed ID: 28378786 Phytoplankton Can Actively Diversify Their Migration Strategy in Response to Turbulent Cues Nature. 03, 2017 | Pubmed ID: 28297706 A Particularly Useful System to Study the Ecology of Microbes Environmental Microbiology Reports. 02, 2017 | Pubmed ID: 27759951 Validation of Picogram- and Femtogram-input DNA Libraries for Microscale Metagenomics PeerJ. 2016 | Pubmed ID: 27688978 Resilience of Bacterial Quorum Sensing Against Fluid Flow Scientific Reports. 09, 2016 | Pubmed ID: 27650454 The Microbial Olympics 2016 Nature Microbiology. 07, 2016 | Pubmed ID: 27573121 Natural Search Algorithms As a Bridge Between Organisms, Evolution, and Ecology Proceedings of the National Academy of Sciences of the United States of America. 08, 2016 | Pubmed ID: 27496324 Speed-dependent Chemotactic Precision in Marine Bacteria Proceedings of the National Academy of Sciences of the United States of America. 08, 2016 | Pubmed ID: 27439872 Intermittent Turbulence in Flowing Bacterial Suspensions Journal of the Royal Society, Interface. 06, 2016 | Pubmed ID: 27307513 Microfluidic Studies of Biofilm Formation in Dynamic Environments Journal of Bacteriology. 10, 2016 | Pubmed ID: 27274032 Sperm Chemotaxis Promotes Individual Fertilization Success in Sea Urchins The Journal of Experimental Biology. 05, 2016 | Pubmed ID: 26994183 A Coral-on-a-chip Microfluidic Platform Enabling Live-imaging Microscopy of Reef-building Corals Nature Communications. Mar, 2016 | Pubmed ID: 26940983 That Sinking Feeling: Suspended Sediments Can Prevent the Ascent of Coral Egg Bundles Scientific Reports. Feb, 2016 | Pubmed ID: 26898352 Chemotaxis Toward Phytoplankton Drives Organic Matter Partitioning Among Marine Bacteria Proceedings of the National Academy of Sciences of the United States of America. Feb, 2016 | Pubmed ID: 26802122 Physical Limits on Bacterial Navigation in Dynamic Environments Journal of the Royal Society, Interface. Jan, 2016 | Pubmed ID: 26763331 Temperature-induced Behavioral Switches in a Bacterial Coral Pathogen The ISME Journal. 06, 2016 | Pubmed ID: 26636553 Live from Under the Lens: Exploring Microbial Motility with Dynamic Imaging and Microfluidics Nature Reviews. Microbiology. Dec, 2015 | Pubmed ID: 26568072 Shear-induced Orientational Dynamics and Spatial Heterogeneity in Suspensions of Motile Phytoplankton Journal of the Royal Society, Interface. 11, 2015 | Pubmed ID: 26538558 Sensitivity of the Rate of Nutrient Uptake by Chemotactic Bacteria to Physical and Biological Parameters in a Turbulent Environment Journal of Theoretical Biology. Dec, 2015 | Pubmed ID: 26392215 Microbes in Flow Current Opinion in Microbiology. Mar, 2015 | Pubmed ID: 25812434 Chemotaxis by Natural Populations of Coral Reef Bacteria The ISME Journal. Jan, 2015 | Pubmed ID: 25615440 Vortical Ciliary Flows Actively Enhance Mass Transport in Reef Corals Proceedings of the National Academy of Sciences of the United States of America. Sep, 2014 | Pubmed ID: 25192936 Failed Escape: Solid Surfaces Prevent Tumbling of Escherichia Coli Physical Review Letters. Aug, 2014 | Pubmed ID: 25148353 RecA Protein Plays a Role in the Chemotactic Response and Chemoreceptor Clustering of Salmonella Enterica PloS One. 2014 | Pubmed ID: 25147953 Microfluidics Expanding the Frontiers of Microbial Ecology Annual Review of Biophysics. 2014 | Pubmed ID: 24773019 Single-cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus Science (New York, N.Y.). Apr, 2014 | Pubmed ID: 24763590 Competition-dispersal Tradeoff Ecologically Differentiates Recently Speciated Marine Bacterioplankton Populations Proceedings of the National Academy of Sciences of the United States of America. Apr, 2014 | Pubmed ID: 24706766 Turbulent Fluid Acceleration Generates Clusters of Gyrotactic Microorganisms Physical Review Letters. Jan, 2014 | Pubmed ID: 24580457 Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef Microbial Ecology. Apr, 2014 | Pubmed ID: 24477921 Synergistic Prevention of Biofouling in Seawater Desalination by Zwitterionic Surfaces and Low-level Chlorination Advanced Materials (Deerfield Beach, Fla.). Mar, 2014 | Pubmed ID: 24375685 A Bacterial Pathogen Uses Dimethylsulfoniopropionate As a Cue to Target Heat-stressed Corals The ISME Journal. May, 2014 | Pubmed ID: 24335830 Capillary Interception of Floating Particles by Surface-piercing Vegetation Physical Review Letters. Oct, 2013 | Pubmed ID: 24182270 The Extracellular Matrix Component Psl Provides Fast-acting Antibiotic Defense in Pseudomonas Aeruginosa Biofilms PLoS Pathogens. 2013 | Pubmed ID: 23950711 Turbulence Drives Microscale Patches of Motile Phytoplankton Nature Communications. 2013 | Pubmed ID: 23852011 Ecology and Physics of Bacterial Chemotaxis in the Ocean Microbiology and Molecular Biology Reviews : MMBR. Dec, 2012 | Pubmed ID: 23204367 Trade-offs of Chemotactic Foraging in Turbulent Water Science (New York, N.Y.). Nov, 2012 | Pubmed ID: 23118190 Marine Microbes See a Sea of Gradients Science (New York, N.Y.). Nov, 2012 | Pubmed ID: 23118182 Thin Phytoplankton Layers: Characteristics, Mechanisms, and Consequences Annual Review of Marine Science. 2012 | Pubmed ID: 22457973 Bacterial Rheotaxis Proceedings of the National Academy of Sciences of the United States of America. Mar, 2012 | Pubmed ID: 22411815 Low-Reynolds-number Swimming at Pycnoclines Proceedings of the National Academy of Sciences of the United States of America. Mar, 2012 | Pubmed ID: 22355147 Microfluidic Characterization and Continuous Separation of Cells and Particles Using Conducting Poly(dimethyl Siloxane) Electrode Induced Alternating Current-dielectrophoresis Analytical Chemistry. Dec, 2011 | Pubmed ID: 22035423 Systematic Spatial Bias in DNA Microarray Hybridization is Caused by Probe Spot Position-dependent Variability in Lateral Diffusion PloS One. 2011 | Pubmed ID: 21858215 Response Rescaling in Bacterial Chemotaxis Proceedings of the National Academy of Sciences of the United States of America. Aug, 2011 | Pubmed ID: 21808031 Gyrotaxis in a Steady Vortical Flow Physical Review Letters. Jun, 2011 | Pubmed ID: 21770545 On the Water Lapping of Felines and the Water Running of Lizards: A Unifying Physical Perspective Communicative & Integrative Biology. Mar, 2011 | Pubmed ID: 21655444 The Ciliate Paramecium Shows Higher Motility in Non-uniform Chemical Landscapes PloS One. 2011 | Pubmed ID: 21494596 Microbial Alignment in Flow Changes Ocean Light Climate Proceedings of the National Academy of Sciences of the United States of America. Mar, 2011 | Pubmed ID: 21368125 Reverse and Flick: Hybrid Locomotion in Bacteria Proceedings of the National Academy of Sciences of the United States of America. Feb, 2011 | Pubmed ID: 21289282 Diffusion-limited Retention of Porous Particles at Density Interfaces Proceedings of the National Academy of Sciences of the United States of America. Dec, 2010 | Pubmed ID: 21135242 How Cats Lap: Water Uptake by Felis Catus Science (New York, N.Y.). Nov, 2010 | Pubmed ID: 21071630 Microfluidics for Bacterial Chemotaxis Integrative Biology : Quantitative Biosciences from Nano to Macro. Nov, 2010 | Pubmed ID: 20967322 Filtration of Submicrometer Particles by Pelagic Tunicates Proceedings of the National Academy of Sciences of the United States of America. Aug, 2010 | Pubmed ID: 20696887 Bacterial Chemotaxis in Linear and Nonlinear Steady Microfluidic Gradients Nano Letters. Sep, 2010 | Pubmed ID: 20669946 Chemoattraction to Dimethylsulfoniopropionate Throughout the Marine Microbial Food Web Science (New York, N.Y.). Jul, 2010 | Pubmed ID: 20647471 Microbiology. Tumbling for Stealth? Science (New York, N.Y.). Jul, 2009 | Pubmed ID: 19628846 Separation of Microscale Chiral Objects by Shear Flow Physical Review Letters. Apr, 2009 | Pubmed ID: 19522552 Disruption of Vertical Motility by Shear Triggers Formation of Thin Phytoplankton Layers Science (New York, N.Y.). Feb, 2009 | Pubmed ID: 19229037 Experimental Verification of the Behavioral Foundation of Bacterial Transport Parameters Using Microfluidics Biophysical Journal. Nov, 2008 | Pubmed ID: 18658218 Rapid Chemotactic Response Enables Marine Bacteria to Exploit Ephemeral Microscale Nutrient Patches Proceedings of the National Academy of Sciences of the United States of America. Mar, 2008 | Pubmed ID: 18337491 छिद्रपूर्ण मीडिया में बायोक्लॉगिंग का अध्ययन करने के लिए एक माइक्रोफ्लुइडिक प्लेटफॉर्म Dorothee L. Kurz1,2, Eleonora Secchi1, Roman Stocker1, Joaquin Jimenez-Martinez1,2 1Department of Civil, Environmental and Geomatic Engineering, Institute of Environmental Engineering, ETH Zurich, 2Department Water Resources and Drinking Water, Swiss Federal Institute of Aquatic Science and Technology JoVE 64689 Environment अनुक्रमिक केशिकाओं-सहायता प्राप्त असेंबली के माध्यम से सूक्ष्मजीवों और सूक्ष्म कणों का पैटर्निंग Roberto Pioli1, Roman Stocker1, Lucio Isa2, Eleonora Secchi1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 2Department of Materials, ETH Zurich JoVE 63131 Engineering जलीय पारिस्थितिकी प्रणालियों में माइक्रोबियल व्यवहार की जांच करने के लिए सीटू केमोटैक्सिस परख में Estelle E. Clerc1, Jean-Baptiste Raina2, Bennett S. Lambert3, Justin Seymour2, Roman Stocker1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, 2Climate Change Cluster, University of Technology Sydney, 3School of Oceanography, University of Washington JoVE 61062 Environment माइक्रोबियल व्यवहार का अध्ययन करने के लिए नियंत्रित, गतिशील रासायनिक परिदृश्य पैदा करना Francesco Carrara1, Douglas R. Brumley2, Andrew M. Hein3, Yutaka Yawata4,5, M. Mehdi Salek1, Kang Soo Lee1, Elzbieta Sliwerska1, Simon A. Levin6, Roman Stocker1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, 2School of Mathematics and Statistics, University of Melbourne, 3Institute of Marine Sciences, University of California, Santa Cruz, 4Faculty of Life and Environmental Sciences, University of Tsukuba, 5Microbiology Research Center for Sustainability, University of Tsukuba, 6Department of Ecology and Evolutionary Biology, Princeton University JoVE 60589 Bioengineering माइक्रो स्केल पोषक तत्व परतें समुद्री - सूक्ष्म जीवों के chemotactic रिस्पांस Justin R. Seymour1, Marcos1, Roman Stocker1 1Environmental Microfluidics Group, MIT - Massachusetts Institute of Technology JoVE 203 Biology बैक्टीरियल Microfluidics का उपयोग chemotaxis के अध्ययन - साक्षात्कार Roman Stocker1 1Environmental Microfluidics Group, MIT - Massachusetts Institute of Technology JoVE 204 Biology
छिद्रपूर्ण मीडिया में बायोक्लॉगिंग का अध्ययन करने के लिए एक माइक्रोफ्लुइडिक प्लेटफॉर्म Dorothee L. Kurz1,2, Eleonora Secchi1, Roman Stocker1, Joaquin Jimenez-Martinez1,2 1Department of Civil, Environmental and Geomatic Engineering, Institute of Environmental Engineering, ETH Zurich, 2Department Water Resources and Drinking Water, Swiss Federal Institute of Aquatic Science and Technology JoVE 64689 Environment
अनुक्रमिक केशिकाओं-सहायता प्राप्त असेंबली के माध्यम से सूक्ष्मजीवों और सूक्ष्म कणों का पैटर्निंग Roberto Pioli1, Roman Stocker1, Lucio Isa2, Eleonora Secchi1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 2Department of Materials, ETH Zurich JoVE 63131 Engineering
जलीय पारिस्थितिकी प्रणालियों में माइक्रोबियल व्यवहार की जांच करने के लिए सीटू केमोटैक्सिस परख में Estelle E. Clerc1, Jean-Baptiste Raina2, Bennett S. Lambert3, Justin Seymour2, Roman Stocker1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zürich, 2Climate Change Cluster, University of Technology Sydney, 3School of Oceanography, University of Washington JoVE 61062 Environment
माइक्रोबियल व्यवहार का अध्ययन करने के लिए नियंत्रित, गतिशील रासायनिक परिदृश्य पैदा करना Francesco Carrara1, Douglas R. Brumley2, Andrew M. Hein3, Yutaka Yawata4,5, M. Mehdi Salek1, Kang Soo Lee1, Elzbieta Sliwerska1, Simon A. Levin6, Roman Stocker1 1Institute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, 2School of Mathematics and Statistics, University of Melbourne, 3Institute of Marine Sciences, University of California, Santa Cruz, 4Faculty of Life and Environmental Sciences, University of Tsukuba, 5Microbiology Research Center for Sustainability, University of Tsukuba, 6Department of Ecology and Evolutionary Biology, Princeton University JoVE 60589 Bioengineering
माइक्रो स्केल पोषक तत्व परतें समुद्री - सूक्ष्म जीवों के chemotactic रिस्पांस Justin R. Seymour1, Marcos1, Roman Stocker1 1Environmental Microfluidics Group, MIT - Massachusetts Institute of Technology JoVE 203 Biology
बैक्टीरियल Microfluidics का उपयोग chemotaxis के अध्ययन - साक्षात्कार Roman Stocker1 1Environmental Microfluidics Group, MIT - Massachusetts Institute of Technology JoVE 204 Biology
