W. Andy Tao

Publications

• Plasma-Derived Extracellular Vesicle Phosphoproteomics Through Chemical Affinity Purification
  Journal of Proteome Research. May, 2020  |   Pubmed ID: 32396726
• A Phosphorylation-based Switch Controls TAA1-mediated Auxin Biosynthesis in Plants
  Nature Communications. 02, 2020  |   Pubmed ID: 32015349
• A RAF-SnRK2 Kinase Cascade Mediates Early Osmotic Stress Signaling in Higher Plants
  Nature Communications. 01, 2020  |   Pubmed ID: 32001690
• Mapping Proteome-wide Targets of Protein Kinases in Plant Stress Responses
  Proceedings of the National Academy of Sciences of the United States of America. Feb, 2020  |   Pubmed ID: 31992638
• Sequential Phosphoproteomics and N-glycoproteomics of Plasma-derived Extracellular Vesicles
  Nature Protocols. 01, 2020  |   Pubmed ID: 31863077
• Tracking Pathogen Infections by Time-Resolved Chemical Proteomics
  Angewandte Chemie (International Ed. in English). 02, 2020  |   Pubmed ID: 31769915
• Methyltransferase-like 21c Methylates and Stabilizes the Heat Shock Protein Hspa8 in Type I Myofibers in Mice
  The Journal of Biological Chemistry. 09, 2019  |   Pubmed ID: 31346037
• Methyltransferase-like 21e Inhibits 26S Proteasome Activity to Facilitate Hypertrophy of Type IIb Myofibers
  FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology. 08, 2019  |   Pubmed ID: 31162944
• Arabinose Biosynthesis is Critical for Salt Stress Tolerance in Arabidopsis
  The New Phytologist. 10, 2019  |   Pubmed ID: 31009077
• Leucine-rich Repeat Extensin Proteins Regulate Plant Salt Tolerance in
  Proceedings of the National Academy of Sciences of the United States of America. 12, 2018  |   Pubmed ID: 30514814
• Arabidopsis AGDP1 Links H3K9me2 to DNA Methylation in Heterochromatin
  Nature Communications. 10, 2018  |   Pubmed ID: 30382101
• High-Throughput Phosphorylation Screening and Validation Through Ti(IV)-Nanopolymer Functionalized Reverse Phase Phosphoprotein Array
  Analytical Chemistry. 09, 2018  |   Pubmed ID: 30103608
• Highly Efficient Phosphoproteome Capture and Analysis from Urinary Extracellular Vesicles
  Journal of Proteome Research. 09, 2018  |   Pubmed ID: 30080416
• Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress
  Molecular & Cellular Proteomics : MCP. 10, 2018  |   Pubmed ID: 30006488
• Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity
  Cell Reports. 06, 2018  |   Pubmed ID: 29898403
• Analytical Pipeline for Discovery and Verification of Glycoproteins from Plasma-Derived Extracellular Vesicles As Breast Cancer Biomarkers
  Analytical Chemistry. 05, 2018  |   Pubmed ID: 29629753
• Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response
  Molecular Cell. 01, 2018  |   Pubmed ID: 29290610
• Acquisition of Cholangiocarcinoma Traits During Advanced Hepatocellular Carcinoma Development in Mice
  The American Journal of Pathology. 03, 2018  |   Pubmed ID: 29248454
• Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases
  The Plant Cell. 01, 2018  |   Pubmed ID: 29233856
• Identification of Upstream Kinases by Fluorescence Complementation Mass Spectrometry
  ACS Central Science. Oct, 2017  |   Pubmed ID: 29104924
• Recent Advances in Phosphoproteomics and Application to Neurological Diseases
  The Analyst. Nov, 2017  |   Pubmed ID: 29094114
• MAP Kinase Cascades Regulate the Cold Response by Modulating ICE1 Protein Stability
  Developmental Cell. 12, 2017  |   Pubmed ID: 29056551
• EZH2 Modifies Sunitinib Resistance in Renal Cell Carcinoma by Kinome Reprogramming
  Cancer Research. 12, 2017  |   Pubmed ID: 28978636
• A Protein Complex Regulates RNA Processing of Intronic Heterochromatin-containing Genes in
  Proceedings of the National Academy of Sciences of the United States of America. 08, 2017  |   Pubmed ID: 28808009
• Identification of Plant Kinase Substrates Based on Kinase Assay-Linked Phosphoproteomics
  Methods in Molecular Biology (Clifton, N.J.). 2017  |   Pubmed ID: 28730489
• The SnRK2 Kinases Modulate MiRNA Accumulation in Arabidopsis
  PLoS Genetics. 04, 2017  |   Pubmed ID: 28419088
• Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry
  Journal of the American Society for Mass Spectrometry. 06, 2017  |   Pubmed ID: 28283928
• Phosphoproteins in Extracellular Vesicles As Candidate Markers for Breast Cancer
  Proceedings of the National Academy of Sciences of the United States of America. 03, 2017  |   Pubmed ID: 28270605
• MST50 is Involved in Multiple MAP Kinase Signaling Pathways in Magnaporthe Oryzae
  Environmental Microbiology. 05, 2017  |   Pubmed ID: 28244240
• Kinase Assay-Linked Phosphoproteomics: Discovery of Direct Kinase Substrates
  Methods in Enzymology. 2017  |   Pubmed ID: 28137576
• A Pair of Transposon-derived Proteins Function in a Histone Acetyltransferase Complex for Active DNA Demethylation
  Cell Research. Feb, 2017  |   Pubmed ID: 27934869
• Three-Dimensionally Functionalized Reverse Phase Glycoprotein Array for Cancer Biomarker Discovery and Validation
  Journal of the American Chemical Society. 11, 2016  |   Pubmed ID: 27933927
• BNIP3 Protein Suppresses PINK1 Kinase Proteolytic Cleavage to Promote Mitophagy
  The Journal of Biological Chemistry. Oct, 2016  |   Pubmed ID: 27528605
• Multiplexed Imaging of Protein Phosphorylation on Membranes Based on Ti(IV) Functionalized Nanopolymers
  Chembiochem : a European Journal of Chemical Biology. 05, 2016  |   Pubmed ID: 27037847
• The E3 Ubiquitin Ligase CHIP Mediates Ubiquitination and Proteasomal Degradation of PRMT5
  Biochimica Et Biophysica Acta. Feb, 2016  |   Pubmed ID: 26658161
• Identification of Direct Kinase Substrates Via Kinase Assay-Linked Phosphoproteomics
  Methods in Molecular Biology (Clifton, N.J.). 2016  |   Pubmed ID: 26584932
• MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis
  PLoS Genetics. Oct, 2015  |   Pubmed ID: 26492035
• Time-Resolved Proteomic Visualization of Dendrimer Cellular Entry and Trafficking
  Journal of the American Chemical Society. Oct, 2015  |   Pubmed ID: 26425924
• In-Depth Analyses of B Cell Signaling Through Tandem Mass Spectrometry of Phosphopeptides Enriched by PolyMAC
  International Journal of Mass Spectrometry. Feb, 2015  |   Pubmed ID: 25954137
• Sensitive Measurement of Total Protein Phosphorylation Level in Complex Protein Samples
  The Analyst. May, 2015  |   Pubmed ID: 25857711
• Universal Non-antibody Detection of Protein Phosphorylation Using PIMAGO
  Current Protocols in Chemical Biology. Mar, 2015  |   Pubmed ID: 25727060
• The Methyl-CpG-binding Protein MBD7 Facilitates Active DNA Demethylation to Limit DNA Hyper-methylation and Transcriptional Gene Silencing
  Molecular Cell. Mar, 2015  |   Pubmed ID: 25684209
• The Sensor Histidine Kinase RgfC Affects Group B Streptococcal Virulence Factor Expression Independent of Its Response Regulator RgfA
  Infection and Immunity. Mar, 2015  |   Pubmed ID: 25561709
• Nitric Oxide Negatively Regulates Abscisic Acid Signaling in Guard Cells by S-nitrosylation of OST1
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2015  |   Pubmed ID: 25550508
• Identification of ERK1 Direct Substrates Using Stable Isotope Labeled Kinase Assay-Linked Phosphoproteomics
  Molecular & Cellular Proteomics : MCP. Jul, 2014  |   Pubmed ID: 25022875
• Specific Visualization and Identification of Phosphoproteome in Gels
  Analytical Chemistry. Jul, 2014  |   Pubmed ID: 24941108
• Global Phosphoproteomics of Activated B Cells Using Complementary Metal Ion Functionalized Soluble Nanopolymers
  Analytical Chemistry. Jul, 2014  |   Pubmed ID: 24905233
• Quantitation of the Phosphoproteome Using the Library-assisted Extracted Ion Chromatogram (LAXIC) Strategy
  Methods in Molecular Biology (Clifton, N.J.). 2014  |   Pubmed ID: 24792004
• Tissue Phosphoproteomics with PolyMAC Identifies Potential Therapeutic Targets in a Transgenic Mouse Model of HER2 Positive Breast Cancer
  Electrophoresis. Dec, 2014  |   Pubmed ID: 24723360
• Current Technologies to Identify Protein Kinase Substrates in High Throughput
  Frontiers in Biology. Apr, 2013  |   Pubmed ID: 25110472
• Phosphatase of Regenerating Liver 3 (PRL3) Provokes a Tyrosine Phosphoproteome to Drive Prometastatic Signal Transduction
  Molecular & Cellular Proteomics : MCP. Dec, 2013  |   Pubmed ID: 24030100
• Intracellular Targets for a Phosphotyrosine Peptidomimetic Include the Mitotic Kinesin, MCAK
  Biochemical Pharmacology. Sep, 2013  |   Pubmed ID: 23830822
• Identification of Direct Tyrosine Kinase Substrates Based on Protein Kinase Assay-linked Phosphoproteomics
  Molecular & Cellular Proteomics : MCP. Oct, 2013  |   Pubmed ID: 23793017
• Quantitative Phosphoproteomics Identifies SnRK2 Protein Kinase Substrates and Reveals the Effectors of Abscisic Acid Action
  Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013  |   Pubmed ID: 23776212
• Quantitative Measurement of Phosphoproteome Response to Osmotic Stress in Arabidopsis Based on Library-Assisted EXtracted Ion Chromatogram (LAXIC)
  Molecular & Cellular Proteomics : MCP. Aug, 2013  |   Pubmed ID: 23660473
• A Quantitative Proteomics-based Competition Binding Assay to Characterize PITAM-protein Interactions
  Analytical Chemistry. May, 2013  |   Pubmed ID: 23611696
• Syk Inhibits the Activity of Protein Kinase A by Phosphorylating Tyrosine 330 of the Catalytic Subunit
  The Journal of Biological Chemistry. Apr, 2013  |   Pubmed ID: 23447535
• 2012 ASMS Fall Workshop: Mass Spectrometry-based Phosphorylation Analysis and Phosphoproteomics
  Journal of the American Society for Mass Spectrometry. Mar, 2013  |   Pubmed ID: 23381688
• Is Phosphoproteomics Ready for Clinical Research?
  Clinica Chimica Acta; International Journal of Clinical Chemistry. May, 2013  |   Pubmed ID: 23159844
• Identification of the Components of a Glycolytic Enzyme Metabolon on the Human Red Blood Cell Membrane
  The Journal of Biological Chemistry. Jan, 2013  |   Pubmed ID: 23150667
• Multiplexed Quantitation of Protein Expression and Phosphorylation Based on Functionalized Soluble Nanopolymers
  Journal of the American Chemical Society. Nov, 2012  |   Pubmed ID: 23088311
• Identification of Cytoskeletal Elements Enclosing the ATP Pools That Fuel Human Red Blood Cell Membrane Cation Pumps
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2012  |   Pubmed ID: 22745158
• Chemical Visualization of Phosphoproteomes on Membrane
  Molecular & Cellular Proteomics : MCP. Sep, 2012  |   Pubmed ID: 22593177
• Sensitive Kinase Assay Linked with Phosphoproteomics for Identifying Direct Kinase Substrates
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2012  |   Pubmed ID: 22451900
• Regulation of Parkin and PINK1 by Neddylation
  Human Molecular Genetics. Jun, 2012  |   Pubmed ID: 22388932
• Functionalized Soluble Nanopolymers for Phosphoproteome Analysis
  Methods in Molecular Biology (Clifton, N.J.). 2011  |   Pubmed ID: 21948422
• Direct Detection of Fatty Acid Ethyl Esters Using Low Temperature Plasma (LTP) Ambient Ionization Mass Spectrometry for Rapid Bacterial Differentiation
  The Analyst. Aug, 2011  |   Pubmed ID: 21706093
• Facile Determination of Double Bond Position in Unsaturated Fatty Acids and Esters by Low Temperature Plasma Ionization Mass Spectrometry
  Analytical Chemistry. Jun, 2011  |   Pubmed ID: 21539336
• Aptamer in Bioanalytical Applications
  Analytical Chemistry. Jun, 2011  |   Pubmed ID: 21524128
• Proteomic Studies of Syk-interacting Proteins Using a Novel Amine-specific Isotope Tag and GFP Nanotrap
  Journal of the American Society for Mass Spectrometry. Feb, 2011  |   Pubmed ID: 21472591
• Identification of Drug Targets in Vitro and in Living Cells by Soluble-nanopolymer-based Proteomics
  Angewandte Chemie (International Ed. in English). Apr, 2011  |   Pubmed ID: 21455918
• Phosphorylation Assay Based on Multifunctionalized Soluble Nanopolymer
  Analytical Chemistry. Apr, 2011  |   Pubmed ID: 21395237
• Purification and Characterization of a Metalloproteinase, Porthidin-1, from the Venom of Lansberg's Hog-nosed Pitvipers (Porthidium Lansbergii Hutmanni)
  Toxicon : Official Journal of the International Society on Toxinology. Mar, 2011  |   Pubmed ID: 21255600
• Regulation of Syk by Phosphorylation on Serine in the Linker Insert
  The Journal of Biological Chemistry. Dec, 2010  |   Pubmed ID: 20956537
• Cloning, Expression, and Hemostatic Activities of a Disintegrin, R-mojastin 1, from the Mohave Rattlesnake (Crotalus Scutulatus Scutulatus)
  Thrombosis Research. Sep, 2010  |   Pubmed ID: 20598348
• In-depth Analyses of Kinase-dependent Tyrosine Phosphoproteomes Based on Metal Ion-functionalized Soluble Nanopolymers
  Molecular & Cellular Proteomics : MCP. Oct, 2010  |   Pubmed ID: 20562096
• Identification of Serine/threonine Kinase Substrates in the Human Pathogen Group B Streptococcus
  Journal of Proteome Research. May, 2009  |   Pubmed ID: 19309132
• Quantitative Phospho-proteomics Based on Soluble Nanopolymers
  Methods in Molecular Biology (Clifton, N.J.). 2009  |   Pubmed ID: 19241010
• Playing Tag with Quantitative Proteomics
  Analytical and Bioanalytical Chemistry. Jan, 2009  |   Pubmed ID: 18843486
• Quantitative Analysis of Snake Venoms Using Soluble Polymer-based Isotope Labeling
  Molecular & Cellular Proteomics : MCP. Apr, 2008  |   Pubmed ID: 18089550
• Soluble Polymer-based Isotopic Labeling (SoPIL): a New Strategy to Discover Protein Biomarkers?
  Expert Review of Proteomics. Oct, 2007  |   Pubmed ID: 17941815
• Profiling Constitutive Proteolytic Events in Vivo
  The Biochemical Journal. Oct, 2007  |   Pubmed ID: 17650073
• Soluble Nanopolymer-based Phosphoproteomics for Studying Protein Phosphatase
  Methods (San Diego, Calif.). Jul, 2007  |   Pubmed ID: 17532516
• A Novel Quantitative Proteomics Reagent Based on Soluble Nanopolymers
  Chemical Communications (Cambridge, England). Mar, 2007  |   Pubmed ID: 17356773
• Rapid Ambient Mass Spectrometric Profiling of Intact, Untreated Bacteria Using Desorption Electrospray Ionization
  Chemical Communications (Cambridge, England). Jan, 2007  |   Pubmed ID: 17279261
• PTEN-deficient Intestinal Stem Cells Initiate Intestinal Polyposis
  Nature Genetics. Feb, 2007  |   Pubmed ID: 17237784
• A Novel Quantitative Proteomics Strategy to Study Phosphorylation-dependent Peptide-protein Interactions
  Journal of Proteome Research. Jan, 2007  |   Pubmed ID: 17203957
• Polar Acetalization and Transacetalization in the Gas Phase: the Eberlin Reaction
  Chemical Reviews. Jan, 2006  |   Pubmed ID: 16402776
• Quantitative Phosphoproteome Analysis Using a Dendrimer Conjugation Chemistry and Tandem Mass Spectrometry
  Nature Methods. Aug, 2005  |   Pubmed ID: 16094384
• Chiral Analysis by MS
  Analytical Chemistry. Jan, 2003  |   Pubmed ID: 12530808
• Ligand and Metal-ion Effects in Metal-ion Clusters Used for Chiral Analysis of Alpha-hydroxy Acids by the Kinetic Method
  Analytical and Bioanalytical Chemistry. Aug, 2002  |   Pubmed ID: 12185574
• Quotient Ratio Method for Quantitative Enantiomeric Determination by Mass Spectrometry
  Analytical Chemistry. Aug, 2002  |   Pubmed ID: 12175167
• Parallel Reactions for Enantiomeric Quantification of Peptides by Mass Spectrometry This Work Was Supported by the U.S. Department of Energy, Office of Energy Research. W.A.T. Acknowledges Fellowship Support from Triangle Pharmaceuticals.
  Angewandte Chemie (International Ed. in English). Feb, 2001  |   Pubmed ID: 11241614
• Replacement of C-O by P-O in Cyclic Acetals and Ketals
  Angewandte Chemie (International Ed. in English). Feb, 1999  |   Pubmed ID: 29711658
• Synthesis of B- and P-Heterocycles by Reaction of Cyclic Acetals and Ketals with Borinium and Phosphonium Ions
  The Journal of Organic Chemistry. Apr, 1999  |   Pubmed ID: 11674423