Caroline C. Friedel Institute for Informatics Ludwig-Maximilians-Universität München Biography Publications Institution JoVE Articles Caroline C. Friedel has not added a biography. If you are Caroline C. Friedel and would like to personalize this page please email our Author Liaison for assistance. Publications Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen PloS One. 2013 | Pubmed ID: 23940809 Deciphering the Modulation of Gene Expression by Type I and II Interferons Combining 4sU-tagging, Translational Arrest and in Silico Promoter Analysis Nucleic Acids Research. Jul, 2013 | Pubmed ID: 23832230 β1- and αv-class Integrins Cooperate to Regulate Myosin II During Rigidity Sensing of Fibronectin-based Microenvironments Nature Cell Biology. Jun, 2013 | Pubmed ID: 23708002 A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-seq PloS One. 2012 | Pubmed ID: 23300661 Real-time Transcriptional Profiling of Cellular and Viral Gene Expression During Lytic Cytomegalovirus Infection PLoS Pathogens. Sep, 2012 | Pubmed ID: 22969428 Detection and Correction of Probe-level Artefacts on Microarrays BMC Bioinformatics. 2012 | Pubmed ID: 22647057 Ultrashort and Progressive 4sU-tagging Reveals Key Characteristics of RNA Processing at Nucleotide Resolution Genome Research. Oct, 2012 | Pubmed ID: 22539649 A Context-based Approach to Identify the Most Likely Mapping for RNA-seq Experiments BMC Bioinformatics. 2012 | Pubmed ID: 22537048 Genome-wide Assessment of AU-rich Elements by the AREScore Algorithm PLoS Genetics. Jan, 2012 | Pubmed ID: 22242014 The SARS-coronavirus-host Interactome: Identification of Cyclophilins As Target for Pan-coronavirus Inhibitors PLoS Pathogens. Oct, 2011 | Pubmed ID: 22046132 Virus-host Interactomes and Global Models of Virus-infected Cells Trends in Microbiology. Oct, 2011 | Pubmed ID: 21855347 Quantitative Proteomics of the Integrin Adhesome Show a Myosin II-dependent Recruitment of LIM Domain Proteins EMBO Reports. Mar, 2011 | Pubmed ID: 21311561 Systematic Analysis of Viral and Cellular MicroRNA Targets in Cells Latently Infected with Human Gamma-herpesviruses by RISC Immunoprecipitation Assay Cell Host & Microbe. Apr, 2010 | Pubmed ID: 20413099 HALO--a Java Framework for Precise Transcript Half-life Determination Bioinformatics (Oxford, England). May, 2010 | Pubmed ID: 20299326 Metabolic Tagging and Purification of Nascent RNA: Implications for Transcriptomics Molecular BioSystems. Nov, 2009 | Pubmed ID: 19823741 Evolutionarily Conserved Herpesviral Protein Interaction Networks PLoS Pathogens. Sep, 2009 | Pubmed ID: 19730696 Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Aug, 2009 | Pubmed ID: 19630542 Conserved Principles of Mammalian Transcriptional Regulation Revealed by RNA Half-life Nucleic Acids Research. Sep, 2009 | Pubmed ID: 19561200 Identifying the Topology of Protein Complexes from Affinity Purification Assays Bioinformatics (Oxford, England). Aug, 2009 | Pubmed ID: 19505940 FERN - a Java Framework for Stochastic Simulation and Evaluation of Reaction Networks BMC Bioinformatics. 2008 | Pubmed ID: 18755046 High-resolution Gene Expression Profiling for Simultaneous Kinetic Parameter Analysis of RNA Synthesis and Decay RNA (New York, N.Y.). Sep, 2008 | Pubmed ID: 18658122 ProCope--protein Complex Prediction and Evaluation Bioinformatics (Oxford, England). Sep, 2008 | Pubmed ID: 18635566 Influence of Degree Correlations on Network Structure and Stability in Protein-protein Interaction Networks BMC Bioinformatics. 2007 | Pubmed ID: 17688687 Analysis of Intraviral Protein-protein Interactions of the SARS Coronavirus ORFeome PloS One. 2007 | Pubmed ID: 17520018 Inferring Topology from Clustering Coefficients in Protein-protein Interaction Networks BMC Bioinformatics. 2006 | Pubmed ID: 17137490 Reliable Gene Signatures for Microarray Classification: Assessment of Stability and Performance Bioinformatics (Oxford, England). Oct, 2006 | Pubmed ID: 16882647 Toward the Complete Interactome Nature Biotechnology. Jun, 2006 | Pubmed ID: 16763580 Support Vector Machines for Separation of Mixed Plant-pathogen EST Collections Based on Codon Usage Bioinformatics (Oxford, England). Apr, 2005 | Pubmed ID: 15585526 Echtzeit-Analyse des Transkriptionsfaktors verbindlich, Transkription, Übersetzung und Umsatz, globale Ereignisse während der zellulären Aktivierung anzuzeigen Kathrin Davari*1, Johannes Lichti*1, Caroline C. Friedel2, Elke Glasmacher1,3 1Institute for Diabetes and Obesity (IDO), German Center for Diabetes Research (DZD), Helmholtz Zentrum München, 2Institute for Informatics, Ludwig-Maximilians-Universität München, 3Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Penzberg JoVE 56752 Genetics Metabolische Markierung der neu transkribierten RNA für High Resolution Gene Expression Profiling von RNA Synthese, Verarbeitung und Decay in Zellkultur Bernd Rädle*1, Andrzej J. Rutkowski*2, Zsolt Ruzsics1, Caroline C. Friedel3, Ulrich H. Koszinowski1, Lars Dölken2 1Max von Pettenkofer Institute, 2Department of Medicine, University of Cambridge, 3Institute for Informatics, Ludwig-Maximilians-University Munich JoVE 50195 Biology
Echtzeit-Analyse des Transkriptionsfaktors verbindlich, Transkription, Übersetzung und Umsatz, globale Ereignisse während der zellulären Aktivierung anzuzeigen Kathrin Davari*1, Johannes Lichti*1, Caroline C. Friedel2, Elke Glasmacher1,3 1Institute for Diabetes and Obesity (IDO), German Center for Diabetes Research (DZD), Helmholtz Zentrum München, 2Institute for Informatics, Ludwig-Maximilians-Universität München, 3Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Penzberg JoVE 56752 Genetics
Metabolische Markierung der neu transkribierten RNA für High Resolution Gene Expression Profiling von RNA Synthese, Verarbeitung und Decay in Zellkultur Bernd Rädle*1, Andrzej J. Rutkowski*2, Zsolt Ruzsics1, Caroline C. Friedel3, Ulrich H. Koszinowski1, Lars Dölken2 1Max von Pettenkofer Institute, 2Department of Medicine, University of Cambridge, 3Institute for Informatics, Ludwig-Maximilians-University Munich JoVE 50195 Biology
