Wenjie Deng Department of Microbiology University of Washington Biography Publications Institution JoVE Articles Wenjie Deng has not added a biography. If you are Wenjie Deng and would like to personalize this page please email our Author Liaison for assistance. Publications Performance of Commonly Used Genotypic Assays and Comparison with Phenotypic Assays of HIV-1 Coreceptor Tropism in Acutely HIV-1-infected Patients The Journal of Antimicrobial Chemotherapy. May, 2015 | Pubmed ID: 25608585 CD8 and CD4 Epitope Predictions in RV144: No Strong Evidence of a T-cell Driven Sieve Effect in HIV-1 Breakthrough Sequences from Trial Participants PloS One. 2014 | Pubmed ID: 25350851 Analysis of HLA A*02 Association with Vaccine Efficacy in the RV144 HIV-1 Vaccine Trial Journal of Virology. Aug, 2014 | Pubmed ID: 24829343 Validation of an Oligonucleotide Ligation Assay for Quantification of Human Immunodeficiency Virus Type 1 Drug-resistant Mutants by Use of Massively Parallel Sequencing Journal of Clinical Microbiology. Jul, 2014 | Pubmed ID: 24740080 Improved Detection of Rare HIV-1 Variants Using 454 Pyrosequencing PloS One. 2013 | Pubmed ID: 24098517 Quality Score Based Identification and Correction of Pyrosequencing Errors PloS One. 2013 | Pubmed ID: 24039850 Indel and Carryforward Correction (ICC): a New Analysis Approach for Processing 454 Pyrosequencing Data Bioinformatics (Oxford, England). Oct, 2013 | Pubmed ID: 23900188 Increased HIV-1 Vaccine Efficacy Against Viruses with Genetic Signatures in Env V2 Nature. Oct, 2012 | Pubmed ID: 22960785 Demographic Processes Affect HIV-1 Evolution in Primary Infection Before the Onset of Selective Processes Journal of Virology. Aug, 2011 | Pubmed ID: 21593162 Increased Breadth and Depth of Cytotoxic T Lymphocytes Responses Against HIV-1-B Nef by Inclusion of Epitope Variant Sequences PloS One. 2011 | Pubmed ID: 21464919 Viral Linkage in HIV-1 Seroconverters and Their Partners in an HIV-1 Prevention Clinical Trial PloS One. 2011 | Pubmed ID: 21399681 Genetic Impact of Vaccination on Breakthrough HIV-1 Sequences from the STEP Trial Nature Medicine. Mar, 2011 | Pubmed ID: 21358627 HIV-1 Envelope Subregion Length Variation During Disease Progression PLoS Pathogens. 2010 | Pubmed ID: 21187897 Amino-acid Co-variation in HIV-1 Gag Subtype C: HLA-mediated Selection Pressure and Compensatory Dynamics PloS One. 2010 | Pubmed ID: 20824187 DIVEIN: a Web Server to Analyze Phylogenies, Sequence Divergence, Diversity, and Informative Sites BioTechniques. May, 2010 | Pubmed ID: 20569214 Phylogenetic Analysis of Population-based and Deep Sequencing Data to Identify Coevolving Sites in the Nef Gene of HIV-1 Molecular Biology and Evolution. Apr, 2010 | Pubmed ID: 19955476 Conserved HIV-1 Epitopes Continuously Elicit Subdominant Cytotoxic T-lymphocyte Responses The Journal of Infectious Diseases. Dec, 2009 | Pubmed ID: 19909083 HIV-1 Superinfection in the Antiretroviral Therapy Era: Are Seroconcordant Sexual Partners at Risk? PloS One. 2009 | Pubmed ID: 19479055 Rare HLA Drive Additional HIV Evolution Compared to More Frequent Alleles AIDS Research and Human Retroviruses. Mar, 2009 | Pubmed ID: 19327049 Env Length and N-linked Glycosylation Following Transmission of Human Immunodeficiency Virus Type 1 Subtype B Viruses Virology. May, 2008 | Pubmed ID: 18314154 Broad and Gag-biased HIV-1 Epitope Repertoires Are Associated with Lower Viral Loads PloS One. 2008 | Pubmed ID: 18183304 Recognition of HIV-1 Peptides by Host CTL is Related to HIV-1 Similarity to Human Proteins PloS One. 2007 | Pubmed ID: 17786195 ViroBLAST: a Stand-alone BLAST Web Server for Flexible Queries of Multiple Databases and User's Datasets Bioinformatics (Oxford, England). Sep, 2007 | Pubmed ID: 17586542 Coping with Viral Diversity in HIV Vaccine Design PLoS Computational Biology. Apr, 2007 | Pubmed ID: 17465674 The Zinc-finger Protein CNBP is Required for Forebrain Formation in the Mouse Development (Cambridge, England). Apr, 2003 | Pubmed ID: 12588852 Pairwise Growth Competition Assay for Determining the Replication Fitness of Human Immunodeficiency Viruses Siriphan Manocheewa1, Erinn C. Lanxon-Cookson1, Yi Liu1, J. Victor Swain1, Jan McClure1, Ushnal Rao1, Brandon Maust1, Wenjie Deng1, Justine E. Sunshine1, Moon Kim1, Morgane Rolland3,4, James I. Mullins1,2 1Department of Microbiology, University of Washington, 2Departments of Medicine and Laboratory Medicine, University of Washington, 3U.S Military HIV Research Program, Walter Reed Army Institute of Research, 4Henry M. Jackson Foundation JoVE 52610 Immunology and Infection
Pairwise Growth Competition Assay for Determining the Replication Fitness of Human Immunodeficiency Viruses Siriphan Manocheewa1, Erinn C. Lanxon-Cookson1, Yi Liu1, J. Victor Swain1, Jan McClure1, Ushnal Rao1, Brandon Maust1, Wenjie Deng1, Justine E. Sunshine1, Moon Kim1, Morgane Rolland3,4, James I. Mullins1,2 1Department of Microbiology, University of Washington, 2Departments of Medicine and Laboratory Medicine, University of Washington, 3U.S Military HIV Research Program, Walter Reed Army Institute of Research, 4Henry M. Jackson Foundation JoVE 52610 Immunology and Infection