Joseph L. DeRisi Department of Laboratory Medicine University of California, San Francisco Biography Publications Institution JoVE Articles Joseph L. DeRisi has not added a biography. If you are Joseph L. DeRisi and would like to personalize this page please email our Author Liaison for assistance. Publications The 3A Protein from Multiple Picornaviruses Utilizes the Golgi Adaptor Protein ACBD3 to Recruit PI4KIIIβ Journal of Virology. Jan, 2012 | Pubmed ID: 22258260 Plate-based Transfection and Culturing Technique for Genetic Manipulation of Plasmodium Falciparum Malaria Journal. Jan, 2012 | Pubmed ID: 22257490 ReCombine: a Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-genome Datasets PloS One. 2011 | Pubmed ID: 22046241 Optimization of Propafenone Analogues As Antimalarial Leads Journal of Medicinal Chemistry. Nov, 2011 | Pubmed ID: 21955244 Assemblathon 1: a Competitive Assessment of De Novo Short Read Assembly Methods Genome Research. Dec, 2011 | Pubmed ID: 21926179 Chemical Rescue of Malaria Parasites Lacking an Apicoplast Defines Organelle Function in Blood-stage Plasmodium Falciparum PLoS Biology. Aug, 2011 | Pubmed ID: 21912516 Synthesis and Evaluation of 7-substituted 4-aminoquinoline Analogues for Antimalarial Activity Journal of Medicinal Chemistry. Oct, 2011 | Pubmed ID: 21910466 Validation of a Diagnostic Microarray for Human Papillomavirus: Coverage of 102 Genotypes Journal of Nucleic Acids. 2011 | Pubmed ID: 21785699 Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia PloS One. 2011 | Pubmed ID: 21687739 Transcriptome Sequencing Demonstrates That Human Papillomavirus is Not Active in Cutaneous Squamous Cell Carcinoma The Journal of Investigative Dermatology. Aug, 2011 | Pubmed ID: 21490616 NK Cells and Immune "memory" Journal of Immunology (Baltimore, Md. : 1950). Feb, 2011 | Pubmed ID: 21289313 RNA-Seq Analysis of Splicing in Plasmodium Falciparum Uncovers New Splice Junctions, Alternative Splicing and Splicing of Antisense Transcripts Nucleic Acids Research. May, 2011 | Pubmed ID: 21245033 Evaluation of Diarylureas for Activity Against Plasmodium Falciparum ACS Medicinal Chemistry Letters. Dec, 2010 | Pubmed ID: 21243104 HMMSplicer: a Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data PloS One. 2010 | Pubmed ID: 21079731 De Novo Identification and Biophysical Characterization of Transcription-factor Binding Sites with Microfluidic Affinity Analysis Nature Biotechnology. Sep, 2010 | Pubmed ID: 20802496 Serological Evidence of Human Klassevirus Infection Clinical and Vaccine Immunology : CVI. Oct, 2010 | Pubmed ID: 20739504 Avian Bornavirus is Present in Many Tissues of Psittacine Birds with Histopathologic Evidence of Proventricular Dilatation Disease Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. Jul, 2010 | Pubmed ID: 20622218 Human Enterovirus 109: a Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua Journal of Virology. Sep, 2010 | Pubmed ID: 20592079 Chemical Genetics of Plasmodium Falciparum Nature. May, 2010 | Pubmed ID: 20485428 Development of a New Generation of 4-aminoquinoline Antimalarial Compounds Using Predictive Pharmacokinetic and Toxicology Models Journal of Medicinal Chemistry. May, 2010 | Pubmed ID: 20361799 VersaCount: Customizable Manual Tally Software for Cell Counting Source Code for Biology and Medicine. 2010 | Pubmed ID: 20180957 Improved Methods for Magnetic Purification of Malaria Parasites and Haemozoin Malaria Journal. 2010 | Pubmed ID: 20074366 Analysis of Naturally Occurring Avian Bornavirus Infection and Transmission During an Outbreak of Proventricular Dilatation Disease Among Captive Psittacine Birds Journal of Virology. Feb, 2010 | Pubmed ID: 19955301 An Enhanced Single Base Extension Technique for the Analysis of Complex Viral Populations PloS One. 2009 | Pubmed ID: 19834618 Antiparasitic Activities of Novel, Orally Available Fumagillin Analogs Bioorganic & Medicinal Chemistry Letters. Sep, 2009 | Pubmed ID: 19648008 Inhibiting Plasmodium Falciparum Growth and Heme Detoxification Pathway Using Heme-binding DNA Aptamers Proceedings of the National Academy of Sciences of the United States of America. Aug, 2009 | Pubmed ID: 19633187 Experimental Induction of Proventricular Dilatation Disease in Cockatiels (Nymphicus Hollandicus) Inoculated with Brain Homogenates Containing Avian Bornavirus 4 Virology Journal. 2009 | Pubmed ID: 19589169 The Complete Genome of Klassevirus - a Novel Picornavirus in Pediatric Stool Virology Journal. 2009 | Pubmed ID: 19538752 The Long March: a Sample Preparation Technique That Enhances Contig Length and Coverage by High-throughput Short-read Sequencing PloS One. 2008 | Pubmed ID: 18941527 Experimental Malaria Infection Triggers Early Expansion of Natural Killer Cells Infection and Immunity. Dec, 2008 | Pubmed ID: 18824529 Identification of Cardioviruses Related to Theiler's Murine Encephalomyelitis Virus in Human Infections Proceedings of the National Academy of Sciences of the United States of America. Sep, 2008 | Pubmed ID: 18768820 Recovery of Divergent Avian Bornaviruses from Cases of Proventricular Dilatation Disease: Identification of a Candidate Etiologic Agent Virology Journal. 2008 | Pubmed ID: 18671869 Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children The Journal of Pediatrics. Jul, 2008 | Pubmed ID: 18571541 N-terminal Processing of Proteins Exported by Malaria Parasites Molecular and Biochemical Parasitology. Aug, 2008 | Pubmed ID: 18534695 Pan-viral Screening of Respiratory Tract Infections in Adults with and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity The Journal of Infectious Diseases. Sep, 2007 | Pubmed ID: 17703411 Whole-genome Analysis of MRNA Decay in Plasmodium Falciparum Reveals a Global Lengthening of MRNA Half-life During the Intra-erythrocytic Development Cycle Genome Biology. 2007 | Pubmed ID: 17612404 Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-virus Microarray Journal of Clinical Microbiology. Jul, 2007 | Pubmed ID: 17494722 Genome-wide Diversity and Selective Pressure in the Human Rhinovirus Virology Journal. 2007 | Pubmed ID: 17477878 Cis-acting Determinants of Asymmetric, Cytoplasmic RNA Transport RNA (New York, N.Y.). May, 2007 | Pubmed ID: 17449729 An Infectious Retrovirus Susceptible to an IFN Antiviral Pathway from Human Prostate Tumors Proceedings of the National Academy of Sciences of the United States of America. Jan, 2007 | Pubmed ID: 17234809 Rapid DNA Mapping by Fluorescent Single Molecule Detection Nucleic Acids Research. 2007 | Pubmed ID: 17175538 Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Oct, 2006 | Pubmed ID: 16983602 Tetracyclines Specifically Target the Apicoplast of the Malaria Parasite Plasmodium Falciparum Antimicrobial Agents and Chemotherapy. Sep, 2006 | Pubmed ID: 16940111 Searching for New Antimalarial Therapeutics Amongst Known Drugs Chemical Biology & Drug Design. Jun, 2006 | Pubmed ID: 16882315 Incorporation of an Intramolecular Hydrogen-bonding Motif in the Side Chain of 4-aminoquinolines Enhances Activity Against Drug-resistant P. Falciparum Journal of Medicinal Chemistry. Jul, 2006 | Pubmed ID: 16854059 Single-cell Proteomic Analysis of S. Cerevisiae Reveals the Architecture of Biological Noise Nature. Jun, 2006 | Pubmed ID: 16699522 Identification of a Novel Gammaretrovirus in Prostate Tumors of Patients Homozygous for R462Q RNASEL Variant PLoS Pathogens. Mar, 2006 | Pubmed ID: 16609730 Comparative Whole Genome Transcriptome Analysis of Three Plasmodium Falciparum Strains Nucleic Acids Research. 2006 | Pubmed ID: 16493140 Genome-wide Mapping of DNA Synthesis in Saccharomyces Cerevisiae Reveals That Mechanisms Preventing Reinitiation of DNA Replication Are Not Redundant Molecular Biology of the Cell. May, 2006 | Pubmed ID: 16481397 Parallel Synthesis of 9-aminoacridines and Their Evaluation Against Chloroquine-resistant Plasmodium Falciparum Bioorganic & Medicinal Chemistry. Jan, 2006 | Pubmed ID: 16216519 Unbiased Selection of Localization Elements Reveals Cis-acting Determinants of MRNA Bud Localization in Saccharomyces Cerevisiae Proceedings of the National Academy of Sciences of the United States of America. Dec, 2005 | Pubmed ID: 16326802 E-Predict: a Computational Strategy for Species Identification Based on Observed DNA Microarray Hybridization Patterns Genome Biology. 2005 | Pubmed ID: 16168085 Genome-wide Identification of Genes Upregulated at the Onset of Gametocytogenesis in Plasmodium Falciparum Molecular and Biochemical Parasitology. Sep, 2005 | Pubmed ID: 16026866 Synthesis of Ring-substituted 4-aminoquinolines and Evaluation of Their Antimalarial Activities Bioorganic & Medicinal Chemistry Letters. Feb, 2005 | Pubmed ID: 15686903 Genomic Dissection of the Cell-type-specification Circuit in Saccharomyces Cerevisiae Proceedings of the National Academy of Sciences of the United States of America. Dec, 2004 | Pubmed ID: 15604142 Pernicious Plans Revealed: Plasmodium Falciparum Genome Wide Expression Analysis Current Opinion in Microbiology. Aug, 2004 | Pubmed ID: 15358256 Genome-wide Mapping of the Cohesin Complex in the Yeast Saccharomyces Cerevisiae PLoS Biology. Sep, 2004 | Pubmed ID: 15309048 The Kinetochore is an Enhancer of Pericentric Cohesin Binding PLoS Biology. Sep, 2004 | Pubmed ID: 15309047 Parallel Synthesis and Antimalarial Screening of a 4-aminoquinoline Library Journal of Combinatorial Chemistry. May-Jun, 2004 | Pubmed ID: 15132606 Viral Discovery and Sequence Recovery Using DNA Microarrays PLoS Biology. Nov, 2003 | Pubmed ID: 14624234 The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium Falciparum PLoS Biology. Oct, 2003 | Pubmed ID: 12929205 Characterization of a Novel Coronavirus Associated with Severe Acute Respiratory Syndrome Science (New York, N.Y.). May, 2003 | Pubmed ID: 12730500 Expression Profiling of the Schizont and Trophozoite Stages of Plasmodium Falciparum with a Long-oligonucleotide Microarray Genome Biology. 2003 | Pubmed ID: 12620119 Microarray-based Detection and Genotyping of Viral Pathogens Proceedings of the National Academy of Sciences of the United States of America. Nov, 2002 | Pubmed ID: 12429852 The Genome-wide Expression Response to Telomerase Deletion in Saccharomyces Cerevisiae Proceedings of the National Academy of Sciences of the United States of America. Jul, 2002 | Pubmed ID: 12084816 Mnd1p: an Evolutionarily Conserved Protein Required for Meiotic Recombination Proceedings of the National Academy of Sciences of the United States of America. May, 2002 | Pubmed ID: 12011448 DNA Microarrays for Malaria Trends in Parasitology. Jan, 2002 | Pubmed ID: 11850013 एक पैन वायरल माइक्रोएरे परख (Virochip) का प्रयोग वायरल रोगज़नक़ों के लिए नैदानिक नमूनों स्क्रीन Eunice C. Chen1, Steve A. Miller1, Joseph L. DeRisi1,2, Charles Y. Chiu1,2 1Department of Laboratory Medicine, University of California, San Francisco, 2Division of Infectious Diseases, University of California, San Francisco JoVE 2536 Immunologie et Infection
एक पैन वायरल माइक्रोएरे परख (Virochip) का प्रयोग वायरल रोगज़नक़ों के लिए नैदानिक नमूनों स्क्रीन Eunice C. Chen1, Steve A. Miller1, Joseph L. DeRisi1,2, Charles Y. Chiu1,2 1Department of Laboratory Medicine, University of California, San Francisco, 2Division of Infectious Diseases, University of California, San Francisco JoVE 2536 Immunologie et Infection