John K. Colbourne School of Biosciences University of Birmingham Biography Publications Institution JoVE Articles John K. Colbourne has not added a biography. If you are John K. Colbourne and would like to personalize this page please email our Author Liaison for assistance. Publications 100 Years of Anthropogenic Impact Causes Changes in Freshwater Functional Biodiversity ELife. Nov, 2023 | Pubmed ID: 37933221 The Hologenome of Daphnia Magna Reveals Possible DNA Methylation and Microbiome-mediated Evolution of the Host Genome Nucleic Acids Research. Oct, 2023 | Pubmed ID: 37638757 Modernizing Persistence-bioaccumulation-toxicity (PBT) Assessment with High Throughput Animal-free Methods Archives of Toxicology. Mar, 2023 | Pubmed ID: 36952002 As a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution Environmental Science & Technology. Oct, 2022 | Pubmed ID: 36169655 Combined Exome and Transcriptome Sequencing of Non-muscle-invasive Bladder Cancer: Associations Between Genomic Changes, Expression Subtypes, and Clinical Outcomes Genome Medicine. Jun, 2022 | Pubmed ID: 35655252 Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity Toxicological Sciences : an Official Journal of the Society of Toxicology. Mar, 2022 | Pubmed ID: 35094093 Refining the Evolutionary Time Machine: An Assessment of Whole Genome Amplification Using Single Historical Daphnia Eggs Molecular Ecology Resources. Apr, 2022 | Pubmed ID: 34672105 Extensive Standing Genetic Variation from a Small Number of Founders Enables Rapid Adaptation in Daphnia Nature Communications. Jul, 2021 | Pubmed ID: 34262034 Centennial Clonal Stability of Asexual in Greenland Lakes Despite Climate Variability Ecology and Evolution. Dec, 2020 | Pubmed ID: 33391708 Spatio-temporal Processes Drive Fine-scale Genetic Structure in an Otherwise Panmictic Seabird Population Scientific Reports. Nov, 2020 | Pubmed ID: 33244100 Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment Molecular Biology and Evolution. Nov, 2020 | Pubmed ID: 32602888 Sex Biased Expression and Co-expression Networks in Development, Using the Hymenopteran Nasonia Vitripennis PLoS Genetics. Jan, 2020 | Pubmed ID: 31986136 A Comprehensive Epigenomic Analysis of Phenotypically Distinguishable, Genetically Identical Female and Male Daphnia Pulex BMC Genomics. Jan, 2020 | Pubmed ID: 31906859 Vision of a Near Future: Bridging the Human Health-environment Divide. Toward an Integrated Strategy to Understand Mechanisms Across Species for Chemical Safety Assessment Toxicology in Vitro : an International Journal Published in Association with BIBRA. Feb, 2020 | Pubmed ID: 31669395 Dynamics of Cadmium Acclimation in : Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein Environmental Science & Technology. Dec, 2019 | Pubmed ID: 31738529 Improved Algal Toxicity Test System for Robust -Driven Mode-of-Action Discovery in Metabolites. May, 2019 | Pubmed ID: 31083411 Transgenerational Response to Early Spring Warming in Daphnia Scientific Reports. Mar, 2019 | Pubmed ID: 30872717 Mixtures of Aluminum and Indium Induce More Than Additive Phenotypic and Toxicogenomic Responses in Daphnia Magna Environmental Science & Technology. Feb, 2019 | Pubmed ID: 30608651 Mitotic Activity Patterns and Cytoskeletal Changes Throughout the Progression of Diapause Developmental Program in Daphnia BMC Cell Biology. Dec, 2018 | Pubmed ID: 30594127 Acidity Promotes Degradation of Multi-species Environmental DNA in Lotic Mesocosms Communications Biology. 2018 | Pubmed ID: 30271891 Pattern of DNA Methylation in Daphnia: Evolutionary Perspective Genome Biology and Evolution. Aug, 2018 | Pubmed ID: 30060190 Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish Environmental Science & Technology. Aug, 2018 | Pubmed ID: 29979584 Scan, Extract, Wrap, Compute-a 3D Method to Analyse Morphological Shape Differences PeerJ. 2018 | Pubmed ID: 29900069 The Transcriptomic and Proteomic Responses of Daphnia Pulex to Changes in Temperature and Food Supply Comprise Environment-specific and Clone-specific Elements BMC Genomics. May, 2018 | Pubmed ID: 29783951 How Omics Technologies Can Enhance Chemical Safety Regulation: Perspectives from Academia, Government, and Industry: The Perspectives Column is a Regular Series Designed to Discuss and Evaluate Potentially Competing Viewpoints and Research Findings on Current Environmental Issues Environmental Toxicology and Chemistry. May, 2018 | Pubmed ID: 29697867 The Toxicogenome of Hyalella Azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology Environmental Science & Technology. May, 2018 | Pubmed ID: 29634279 Evolutionary Transition from Blood Feeding to Obligate Nonbiting in a Mosquito Proceedings of the National Academy of Sciences of the United States of America. Jan, 2018 | Pubmed ID: 29255013 Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia Genome Biology and Evolution. Jun, 2017 | Pubmed ID: 28854641 Early Transcriptional Response Pathways in Daphnia Magna Are Coordinated in Networks of Crustacean-specific Genes Molecular Ecology. Jul, 2017 | Pubmed ID: 28746735 The Landscape of Extreme Genomic Variation in the Highly Adaptable Atlantic Killifish Genome Biology and Evolution. Mar, 2017 | Pubmed ID: 28201664 The Genomic Landscape of Rapid Repeated Evolutionary Adaptation to Toxic Pollution in Wild Fish Science (New York, N.Y.). Dec, 2016 | Pubmed ID: 27940876 OGS2: Genome Re-annotation of the Jewel Wasp Nasonia Vitripennis BMC Genomics. Aug, 2016 | Pubmed ID: 27561358 Thermal Variation and Factors Influencing Vertical Migration Behavior in Daphnia Populations Journal of Thermal Biology. Aug, 2016 | Pubmed ID: 27503718 Daphnia Magna Transcriptome by RNA-Seq Across 12 Environmental Stressors Scientific Data. 05, 2016 | Pubmed ID: 27164179 Male Meiosis in Crustacea: Synapsis, Recombination, Epigenetics and Fertility in Daphnia Magna Chromosoma. Sep, 2016 | Pubmed ID: 26685998 Novel Cadmium Responsive MicroRNAs in Daphnia Pulex Environmental Science & Technology. Dec, 2015 | Pubmed ID: 26550707 Evolutionary Divergence of Core and Post-translational Circadian Clock Genes in the Pitcher-plant Mosquito, Wyeomyia Smithii BMC Genomics. Oct, 2015 | Pubmed ID: 26444857 Ionotropic Glutamate Receptors Mediate Inducible Defense in the Water Flea Daphnia Pulex PloS One. 2015 | Pubmed ID: 25799112 Genomes of the Rice Pest Brown Planthopper and Its Endosymbionts Reveal Complex Complementary Contributions for Host Adaptation Genome Biology. Dec, 2014 | Pubmed ID: 25609551 Functional Genomics of Acclimation and Adaptation in Response to Thermal Stress in Daphnia BMC Genomics. Oct, 2014 | Pubmed ID: 25282344 Natural Selection Canalizes Expression Variation of Environmentally Induced Plasticity-enabling Genes Molecular Biology and Evolution. Nov, 2014 | Pubmed ID: 25158801 Genomic Data Integration for Ecological and Evolutionary Traits in Non-model Organisms BMC Genomics. Jul, 2014 | Pubmed ID: 25047861 Transcriptome Assembly and Microarray Construction for Enchytraeus Crypticus, a Model Oligochaete to Assess Stress Response Mechanisms Derived from Soil Conditions BMC Genomics. 2014 | Pubmed ID: 24758194 Genome-wide Transcription Profiles Reveal Genotype-dependent Responses of Biological Pathways and Gene-families in Daphnia Exposed to Single and Mixed Stressors Environmental Science & Technology. Mar, 2014 | Pubmed ID: 24552364 Potential for Sexual Conflict Assessed Via Testosterone-mediated Transcriptional Changes in Liver and Muscle of a Songbird The Journal of Experimental Biology. Feb, 2014 | Pubmed ID: 24198265 Function and Evolution of DNA Methylation in Nasonia Vitripennis PLoS Genetics. 2013 | Pubmed ID: 24130511 Transcription Patterns of Genes Encoding Four Metallothionein Homologs in Daphnia Pulex Exposed to Copper and Cadmium Are Time- and Homolog-dependent Aquatic Toxicology (Amsterdam, Netherlands). Oct, 2013 | Pubmed ID: 24113165 Testosterone Affects Neural Gene Expression Differently in Male and Female Juncos: a Role for Hormones in Mediating Sexual Dimorphism and Conflict PloS One. 2013 | Pubmed ID: 23613935 Molecular Cloning of Doublesex Genes of Four Cladocera (water Flea) Species BMC Genomics. Apr, 2013 | Pubmed ID: 23575357 Why So Many Unknown Genes? Partitioning Orphans from a Representative Transcriptome of the Lone Star Tick Amblyomma Americanum BMC Genomics. Feb, 2013 | Pubmed ID: 23445305 Evaluación de la toxicidad química en adultos Drosophila melanogaster Jessica M. Holsopple*1,2, Shannon R. Smoot*1, Ellen M. Popodi1,2, John K. Colbourne3, Joseph R. Shaw4, Brian Oliver5, Thomas C. Kaufman1, Jason M. Tennessen1 1Department of Biology, Indiana University, 2Bloomington Drosophila Stock Center, Department of Biology, Indiana University, 3School of Biosciences, University of Birmingham, 4O'Neill School of Public and Environmental Affairs, Indiana University, 5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health JoVE 65029 Biologia
Evaluación de la toxicidad química en adultos Drosophila melanogaster Jessica M. Holsopple*1,2, Shannon R. Smoot*1, Ellen M. Popodi1,2, John K. Colbourne3, Joseph R. Shaw4, Brian Oliver5, Thomas C. Kaufman1, Jason M. Tennessen1 1Department of Biology, Indiana University, 2Bloomington Drosophila Stock Center, Department of Biology, Indiana University, 3School of Biosciences, University of Birmingham, 4O'Neill School of Public and Environmental Affairs, Indiana University, 5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health JoVE 65029 Biologia