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Depletion of Ribosomal RNA for Mosquito Gut Metagenomic RNA-seq
 

Depletion of Ribosomal RNA for Mosquito Gut Metagenomic RNA-seq

Article DOI: 10.3791/50093-v 06:22 min April 7th, 2013
April 7th, 2013

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Summary

A ribosomal RNA (rRNA) depletion protocol was developed to enrich messenger RNA (mRNA) for RNA-seq of the mosquito gut metatranscriptome. Sample specific rRNA probes, which were used to remove rRNA via subtraction, were created from the mosquito and its gut microbes. Performance of the protocol can result in the removal of approximately 90-99% of rRNA.

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Keywords: Mosquito Gut Metagenomics RNA-seq Ribosomal RNA Depletion RRNA Capture Probes MRNA Enrichment Microbial Community Mosquito Life Traits Transcriptome Analysis
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