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Journal / Bioengineering / Pattern-based Search of Epigenomic Data Using…
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Bioengineering
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JoVE Journal Bioengineering
Pattern-based Search of Epigenomic Data Using GeNemo
 

Pattern-based Search of Epigenomic Data Using GeNemo

Article DOI: 10.3791/56136-v • 06:38 min • October 8th, 2017
October 8th, 2017 •
*1, *1, 1
1Department of Bioengineering, University of California San Diego
* These authors contributed equally

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Unlike DNA sequence data, epigenomic data are not readily subjected to text-based searches. Presented here are the procedures to use an upgraded version of GeNemo, a web-based bioinformatics tool, to conduct pattern-based searches for similarities in epigenomic data comparing available online databases including Encyclopedia of DNA Elements with user's data.

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Keywords: - GeNemo - Epigenomic Data - Pattern-based Search - DNA-binding Protein - Epigenetic Modifications - Cell Types - ENCODE - Mousington - BED Format - Bigwig Format - Search Range - Chromosome - Base Pair
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